Dictyostelium discoideum cDNA Contig-U10454-1

Assembled

Chromosomal Location of Contig-U10454-1

Sequence Contig-U10454-1

GTTGAATGCT TTAAATAAAA CTTGTTTAAA TAGATATAAA TATTGCAAAA
CCAATATAAA CCAAGTTTTC AATCGCGCAA ACTACACAAA TAATAATAAT
AATAATAATA ATAATAACAG TTTAAATAAT AATAAAGATT TCAATAAAAT
CAAATTTAGT TTAAGTGAAA TTAAAGACGG AGGAAAAATA TTGAATCAAT
ATACATTTAA TGATTTTAAT AATACTATAG AATCAACATC ATCATCTATT
AATAATAATA ATAATAATAA TAATAAATTT GAATTAATTA AAAACAAACA
ACAAAAACTA TTAACTACTC AAGAGAAAGA ATTAAAACTT GATGATAATA
AATTATTTGA CTCAATAAAA AAATTATTTT TACCAAAAAG GATATCCATC
AACAGTTACC AGTGATTATA TAGGATACCA AAAAATGGAT GTTTATTCAA
AATGTAATTG GTTCAACAAC NTATGTTTTA AGTACACATG CATTATTAAC
ATCTGTGATT GGAATTAGTA GTACATCAGC TTTACCATTT GCAGCTGCAA
TCTCTTGGGT TTTAAAAGAT GGTTTGGGTG CCACTGCATT GGTTTTATTT
GCAAATAAAT ATAGTACACT ATTTGATTAT GATATTAAAA AATATAAATT
TAGGGGTGAT TTATTACATA ATTTTGGTGT TTTGTTAGAA ATGTTTACAC
CATTTTTCCA ACAATTTTTT TTACCATTGG CATCAATTTC AAATTTATCA
AAAGGTTTAG CAGGTTTAAT TTATGGCAGT ACTAGAGCAA GTTTAAATAG
AAGTTTTTCA TTAAAAGAGA ATATTGGTGA TATTACAGCT AAATATCAAT
CACAAAGTAT GGCAGCCTAT TTATCTGGTA TGGCTATTGG ATCTAGTATT
GGAATGATTT TATCTGTATT TCCATTAACT TCAGTTTCAA ATTTATCAAT
GGTTTTCGGT TTATCCTTTA TTCATATTTT TTGTGGTATA AATGCAATTA
AATCAATTGA TTTAAAAACA TTAAATCAAC AAAGAACTTC AATTTTAA

Translated Amino Acid Sequence Contig-U10454-1

vecfk*nlfk*i*ilqnqykpsfqsrklhk*********qfk***rfq*nqi*fk*n*rr
rkniesiyi**f**yyriniiiy*********i*in*kqttktinysrerikt****ii*
lnkkiiftkkdihqqlpvii*DTKKWMFIQNVIGSTTYVLSTHALLTSVIGISSTSALPF
AAAISWVLKDGLGATALVLFANKYSTLFDYDIKKYKFRGDLLHNFGVLLEMFTPFFQQFF
LPLASISNLSKGLAGLIYGSTRASLNRSFSLKENIGDITAKYQSQSMAAYLSGMAIGSSI
GMILSVFPLTSVSNLSMVFGLSFIHIFCGINAIKSIDLKTLNQQRTSIL

Homology Contig-U10454-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10454-1 (Contig-U10454-1Q) /CSM_Contig/Conti...  1435  0.0
Contig-U04354-1 (Contig-U04354-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10361-1 (Contig-U10361-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U13602-1 (Contig-U13602-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U13387-1 (Contig-U13387-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U12743-1 (Contig-U12743-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U10682-1 (Contig-U10682-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U10517-1 (Contig-U10517-1Q) /CSM_Contig/Conti...    36  0.074

Homology Contig-U10454-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ433570) Dictyostelium discoideum cDNA clone:ddv22e10, 3' ...   664   0.0    2
(BJ415352) Dictyostelium discoideum cDNA clone:ddv22e10, 5' ...   317   0.0    6
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg...    38   0.005  18
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg...    38   0.005  18
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    38   0.005  15
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    32   0.031  8
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    36   0.045  16
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.057  16
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   0.15   19
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                38   0.15   15

Homology Contig-U10454-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q86K80) RecName: Full=UPF0420 protein;  &AC116977_25(AC116977|p...   104   6e-24
AC027656_21(AC027656|pid:none) Sequence of BAC F21F23 from Arabi...   101   1e-22
BT004280_1(BT004280|pid:none) Arabidopsis thaliana clone RAFL15-...   101   1e-22
BT069953_1(BT069953|pid:none) Zea mays full-length cDNA clone ZM...   108   4e-22
AC123596_20(AC123596|pid:none) Medicago truncatula clone mth1-17...   102   1e-21
CP000588_252(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   105   2e-21
AL731633_17(AL731633|pid:none) Oryza sativa genomic DNA, chromos...   102   2e-21
AP003346_12(AP003346|pid:none) Oryza sativa Japonica Group genom...   105   3e-21
AP008211_1199(AP008211|pid:none) Oryza sativa (japonica cultivar...   103   8e-21
AC137623_10(AC137623|pid:none) Oryza sativa (japonica cultivar-g...   103   8e-21