<Clone: Contig-U10410-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U10410-1

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Assembled

Chromosomal Location of Contig-U10410-1

< more Chromosomal info >

Chromosome Number 1
Length 4919822
Start Poin 2,480,192
End Point 2,481,295
Strand PLUS

Sequence Contig-U10410-1

TTGAAAAGAA ATTAAAATTA AAAAATGAAA AAAATCAAAA ACAATCATCT
GAACAAGAAT CGAATGAAAT AATAAATAAA AAAGAAGAAG AAAAACAAGA
AGAAAAACAA GAGGNAAAAA GTTGAAGAAA TTAAAGAAAA AGTTGAAGAA
ATTAAACAAA TTGATCCATC AAATTTAGAA GATTATGATG AAGGTAATGA
TGAAGTTACA AATGAAACTA CAATTGAATC AAATGAAATT TCAGATGAAT
TATTAGAAAA GATTAATTCA ACTTTATCAA AGAAAATTTC AATTGTAAAT
GATGAGTCAG ATATCAAAAA TAGTTTAATT GAAAAAGAAG ATTCAACAAC
AACAACAACA ACAACAACAA CAACAACAAC AACAACAACA AAATCAACAA
CTACAAATAA TAATAAATAT TCAAAGAAAT TAATTACATT TTCAGATGAA
GAAAAAGATA TAATGAAAAA TTTACCAAAT AAAGAATATA TGATTAGTAA
TGAAAAATCA ATATTACTTG GATTGGTTGA TATAATTTAT TCATATGCAT
ATAATGAAAG AGTTAATATG GGTTATGAAA ATATTGAATC AGCTTGGAAC
ATTTGTAAAT TGTCAGGTAC ATTATCATGT CTTGATAATT TTTATAATTT
ATCATCAGTT TTAGAATGTT GTTTTAAGAG ATCATTAACG TTCCCACTTT
ATCGTAGTTG GTTATTATCA GAACGTGTTC TTAGAGATAC AAAACAAATT
TTCCAATTAG GAAAAAGATC ACTTTTAAAA TGTTTATTAG ATATTAAAAA
GAAATTAGAA TCTTCAGAAT TTAAATACTA CTTAAATAGA TTATATATTG
ATGATTATTG TATTTGGTTA CAACATGCAA GTAAAAAGAA ATTAAAATCA
TTACGTAATA AATTATCTGA ATATGAAATG AAAAAGTCAA TGATATCATG
GCCATTAGAA GAATATGAAA AATTAGTTGA AGAAGAAGGT ATGGTATTTG
GTGAAGAAGA AGAGGATGAA GATAATAAAG AAGAACAATT TGAATANAAA
ATCAAGATAA AGNATTAAAT AAAAATAAAA ATAAAAAATT AAAATAAAAA

Translated Amino Acid Sequence Contig-U10410-1

<All Frames> 
lkrn*n*kmkkiknnhlnknrmk**IKKKKKNKKKNKRXKVEEIKEKVEEIKQIDPSNLE
DYDEGNDEVTNETTIESNEISDELLEKINSTLSKKISIVNDESDIKNSLIEKEDSTTTTT
TTTTTTTTTTKSTTTNNNKYSKKLITFSDEEKDIMKNLPNKEYMISNEKSILLGLVDIIY
SYAYNERVNMGYENIESAWNICKLSGTLSCLDNFYNLSSVLECCFKRSLTFPLYRSWLLS
ERVLRDTKQIFQLGKRSLLKCLLDIKKKLESSEFKYYLNRLYIDDYCIWLQHASKKKLKS
LRNKLSEYEMKKSMISWPLEEYEKLVEEEGMVFGEEEEDEDNKEEQFEXKIKIKX*ikik
ikn*nk


Homology Contig-U10410-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U10410-1 (Contig-U10410-1Q) /CSM_Contig/Conti...  1304  0.0
Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U12862-1 (Contig-U12862-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11360-1 (Contig-U11360-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12421-1 (Contig-U12421-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12181-1 (Contig-U12181-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11309-1 (Contig-U11309-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09273-1 (Contig-U09273-1Q) /CSM_Contig/Conti...    40  0.005


Homology Contig-U10410-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ434388) Dictyostelium discoideum cDNA clone:ddv16p18, 3' ...  1070   0.0    1
(BJ413714) Dictyostelium discoideum cDNA clone:ddv16p18, 5' ...   363   0.0    2
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg...    36   1e-04  17
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg...    36   1e-04  17
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    40   2e-04  16
(ER479135) 1093015253432 Global-Ocean-Sampling_GS-35-01-01-1...    48   0.003  3
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    38   0.003  16
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.004  14
(AC064813) Homo sapiens chromosome 15 clone RP11-691D11 map ...    48   0.007  6
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen...    36   0.011  18


Homology Contig-U10410-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AB004538_3(AB004538|pid:none) Schizosaccharomyces pombe 39 kb ge...   129   2e-28
BC167497_1(BC167497|pid:none) Xenopus laevis hypothetical protei...   114   5e-24
(A1L1R0) RecName: Full=Protein SHQ1 homolog;  &BC129178_1(BC1291...   113   1e-23
AK001401_1(AK001401|pid:none) Homo sapiens cDNA FLJ10539 fis, cl...   112   3e-23
BC047879_1(BC047879|pid:none) Homo sapiens SHQ1 homolog (S. cere...   112   3e-23
CS185618_1(CS185618|pid:none) Sequence 101 from Patent EP1591448.     108   4e-22
BT045391_1(BT045391|pid:none) Salmo salar clone ssal-rgf-520-036...   107   1e-21
(Q9TYM6) RecName: Full=Protein SHQ1 homolog;  &AF125455_2(AF1254...    98   4e-19
BT076287_1(BT076287|pid:none) Caligus rogercresseyi clone crog-e...    94   8e-18
T33900(T33900)hypothetical protein Y48A5A.1 - Caenorhabditis ele...    86   2e-15


<Clone: Contig-U10410-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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