Homology Contig-U10410-1 vs DNA
Query= Contig-U10410-1 (Contig-U10410-1Q) /CSM_Contig/Contig-U10410-1Q.Seq.d
(1100 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ434388) Dictyostelium discoideum cDNA clone:ddv16p18, 3' ... 1070 0.0 1
(BJ413714) Dictyostelium discoideum cDNA clone:ddv16p18, 5' ... 363 0.0 2
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg... 36 1e-04 17
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg... 36 1e-04 17
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 40 2e-04 16
(ER479135) 1093015253432 Global-Ocean-Sampling_GS-35-01-01-1... 48 0.003 3
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 38 0.003 16
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 0.004 14
(AC064813) Homo sapiens chromosome 15 clone RP11-691D11 map ... 48 0.007 6
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen... 36 0.011 18
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 54 0.012 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 54 0.012 1
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 40 0.014 9
(CL879857) abf41e12.x1 Soybean random, unfiltered genomic li... 40 0.032 2
(EJ508417) 1095407030651 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.058 2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 0.067 19
(CP000312) Clostridium perfringens SM101, complete genome. 36 0.088 21
(AC087880) Homo sapiens 12q BAC RP11-121J20 (Roswell Park Ca... 38 0.11 2
(AC068796) Homo sapiens chromosome 12 clone RP11-28A18, WORK... 38 0.12 2
(AC016121) Homo sapiens clone RP11-28A17, WORKING DRAFT SEQU... 38 0.12 2
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 40 0.12 19
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.14 18
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 32 0.16 15
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.19 14
(CU138518) Zebrafish DNA sequence from clone CH211-193O5. 50 0.19 1
(AZ067410) RPCI-23-392J12.TJ RPCI-23 Mus musculus genomic cl... 50 0.19 1
(ES839972) UFL_060_09 Cotton fiber 0-10 day post anthesis Go... 50 0.19 1
(CU861955) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.25 7
(AC186776) Trichinella spiralis chromosome UNK clone TS195-3... 38 0.31 5
(AE017308) Mycoplasma mobile 163K complete genome. 32 0.39 18
(AC189553) Brassica rapa subsp. pekinensis clone KBrH006A08,... 38 0.49 7
(CU861941) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.50 7
(AC233392) Solanum tuberosum chromosome 1 clone RH046O24, **... 36 0.52 4
(FN357886) Schistosoma mansoni genome sequence supercontig S... 42 0.56 6
(CP001083) Clostridium botulinum Ba4 str. 657, complete genome. 36 0.56 17
(CE557747) tigr-gss-dog-17000310210257 Dog Library Canis lup... 46 0.61 2
(CP000994) Borrelia recurrentis A1 plasmid pl124, complete s... 38 0.63 8
(AJ239043) Buchnera aphidicola partial yhbz; rpsI; rplM; aro... 44 0.65 3
(CE115309) tigr-gss-dog-17000325021388 Dog Library Canis lup... 40 0.68 2
(CR931792) Zebrafish DNA sequence from clone DKEY-180L1 in l... 48 0.76 1
(CQ572609) Sequence 367 from Patent WO0171042. 48 0.76 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 48 0.76 1
(AC010118) Drosophila melanogaster 3L BAC RP98-10D15 (Roswel... 48 0.76 1
(AC005557) Drosophila melanogaster, chromosome 3L, region 62... 48 0.76 1
(AC087433) Homo sapiens chromosome 15 clone RP11-101J17 and ... 48 0.76 1
(AC121475) Rattus norvegicus clone CH230-114I20, *** SEQUENC... 48 0.76 1
(AC111933) Rattus norvegicus clone CH230-155D1, WORKING DRAF... 48 0.76 1
(AC106536) Rattus norvegicus clone CH230-149D23, WORKING DRA... 48 0.76 1
(AC098113) Rattus norvegicus clone CH230-153H24, WORKING DRA... 48 0.76 1
(AC097423) Rattus norvegicus clone CH230-45B14, *** SEQUENCI... 48 0.76 1
(AC048385) Homo sapiens chromosome 15 clone RP11-501G11 map ... 48 0.76 1
(AC183002) Bos taurus clone CH240-128D20, WORKING DRAFT SEQU... 48 0.76 1
(AC017225) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.76 1
(FI396081) CH322-119B23.y CHORI-322 Drosophila melanogaster ... 48 0.76 1
(ER292091) 1092343611478 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.76 1
(EK396332) 1095469522536 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.76 1
(CT747680) Paramecium tetraurelia 5-PRIME EST from clone LK0... 48 0.76 1
(CU571407) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.1 10
(BD453072) Diagnosis of Diseases Associated with tumor suppr... 42 1.3 3
(AX251551) Sequence 519 from Patent WO0168912. 42 1.3 3
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 34 1.3 17
(CP000728) Clostridium botulinum F str. Langeland, complete ... 34 1.5 17
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 32 1.5 11
(AC146865) Medicago truncatula clone mth2-36m14, complete se... 34 1.6 2
(BE806585) ss63g11.y1 Gm-c1062 Glycine max cDNA clone GENOME... 40 1.8 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 36 1.8 18
(AC226823) Solanum lycopersicum chromosome 5 clone C05HBa006... 40 2.0 5
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple... 34 2.1 18
(BW663095) Glycine max cDNA clone: GMFL01-21-E03, 3'end. 40 2.1 2
(FB571326) Sequence 193 from Patent EP1865317. 30 2.1 10
(FM995165) Candida castellii complete mitochondrial genome, ... 42 2.6 4
(GS364539) LuSp168G15_1061063913719_TP POTATO-B-01-100-110KB... 38 2.6 2
(EJ413825) 1093012168062 Global-Ocean-Sampling_GS-28-01-01-1... 42 2.7 2
(EJ548521) 1092959422219 Global-Ocean-Sampling_GS-29-01-01-1... 42 2.7 2
(EJ806244) 1093017460612 Global-Ocean-Sampling_GS-30-02-01-1... 42 2.9 2
(AE017263) Mesoplasma florum L1 complete genome. 34 3.0 17
(AC139847) Mus musculus BAC clone RP23-387P21 from chromosom... 46 3.0 1
(AC135378) Mus musculus BAC clone RP24-284L24 from chromosom... 46 3.0 1
(AC129187) Mus musculus BAC clone RP23-427D4 from chromosome... 46 3.0 1
(AC117230) Mus musculus BAC clone RP23-385F15 from 16, compl... 46 3.0 1
(AC113181) Mus musculus chromosome 5, clone RP23-359I6, comp... 46 3.0 1
(AC092404) Mus musculus strain C57BL6/J chromosome 5 clone R... 46 3.0 1
(FM995164) Nakaseomyces delphensis complete mitochondrial ge... 46 3.0 1
(AM462111) Vitis vinifera contig VV78X019523.21, whole genom... 46 3.0 1
(AJ235921) Kluyveromyces delphensis mitochondrial COII gene,... 46 3.0 1
(AF442226) Kluyveromyces delphensis truncated cytochrome oxi... 46 3.0 1
(AC117579) Mus musculus chromosome 3 clone RP23-37P22 map 3,... 46 3.0 1
(CT868711) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.0 1
(AZ029042) RPCI-23-244N3.TV RPCI-23 Mus musculus genomic clo... 46 3.0 1
(AQ683282) HS_5418_B1_A04_SP6E RPCI-11 Human Male BAC Librar... 46 3.0 1
(ER469068) 1092963942602 Global-Ocean-Sampling_GS-35-01-01-1... 36 3.0 2
(U40232) Plasmodium falciparum exported serine/threonine pro... 34 3.2 5
(EJ166620) 1092344068093 Global-Ocean-Sampling_GS-27-01-01-1... 42 3.2 2
(AU267189) Dictyostelium discoideum vegetative cDNA clone:VS... 38 3.3 2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 3.3 11
(ER313204) 1092343820991 Global-Ocean-Sampling_GS-34-01-01-1... 36 3.4 2
(EU100928) Apis dorsata isolate DorsIII18Maly complementary ... 34 3.5 3
(GS294830) LuSp031P06_1061063857094_TP POTATO-B-01-100-110KB... 32 3.5 3
(EU100929) Apis dorsata isolate DorsIII18Thai complementary ... 34 3.5 3
(EU100933) Apis dorsata isolate DorsIII27Thai complementary ... 34 3.6 3
(AC147846) Otolemur garnettii clone CH256-361F16, WORKING DR... 38 3.6 7
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 30 3.8 10
(AC176478) Strongylocentrotus purpuratus clone R3-3070K21, W... 40 3.9 8
(AC189287) Solanum lycopersicum chromosome 5 clone C05HBa016... 34 3.9 7
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 4.3 17
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 34 4.3 17
(FN357915) Schistosoma mansoni genome sequence supercontig S... 42 4.5 9
(AG742096) Macaca fuscata fuscata DNA, clone: MSB2-202J05_R,... 34 4.5 3
(FN357558) Schistosoma mansoni genome sequence supercontig S... 44 4.6 4
(HB485795) Sequence 43 from Patent WO2009086005. 34 4.6 2
(AC199983) Chlorocebus aethiops clone CH252-498D16, WORKING ... 34 4.6 7
(AM258967) Yersinia enterocolitica (type 0:3) rtx-like gene ... 34 4.6 4
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus... 34 4.7 2
(EA655808) Sequence 34687 from patent US 7365185. 42 4.9 2
(GC699333) Sequence 14578 from patent US 6812339. 32 5.1 2
(GC699332) Sequence 14577 from patent US 6812339. 32 5.1 2
(FN357721) Schistosoma mansoni genome sequence supercontig S... 32 5.2 2
(AC173268) Bos taurus clone CH240-227E17, WORKING DRAFT SEQU... 32 5.4 7
(AC222327) Bos taurus clone CH240-415C23, WORKING DRAFT SEQU... 34 5.4 2
(AC231173) Bos taurus clone CH240-79I11, WORKING DRAFT SEQUE... 34 5.4 2
(AX344564) Sequence 15 from Patent WO0200932. 34 5.4 10
(GC697202) Sequence 12447 from patent US 6812339. 36 5.5 6
(EU028329) Glycine max clone BAC gmw1-24M16 genomic sequence. 32 5.6 2
(FN357485) Schistosoma mansoni genome sequence supercontig S... 42 5.6 13
(AC025344) Homo sapiens chromosome X clone RP11-392M9 map X,... 32 5.6 2
(AL031053) Human DNA sequence from clone RP1-267M20 on chrom... 32 5.6 2
(AC150797) Bos taurus clone CH240-79I11, WORKING DRAFT SEQUE... 34 5.7 2
(CP000727) Clostridium botulinum A str. Hall, complete genome. 34 5.7 18
(AC150931) Bos taurus clone CH240-495D17, WORKING DRAFT SEQU... 34 5.7 2
(AC146212) Pan troglodytes BAC clone RP43-33F1 from chromoso... 32 5.7 6
(CR318605) Zebrafish DNA sequence from clone DKEY-109C12 in ... 32 5.8 2
(AK047717) Mus musculus adult male corpus striatum cDNA, RIK... 40 5.9 2
(AL136093) Human DNA sequence from clone RP3-472A9 on chromo... 36 5.9 5
(AC215773) Solanum tuberosum chromosome 6 clone RHPOTKEY068I... 32 6.0 10
(FN357547) Schistosoma mansoni genome sequence supercontig S... 42 6.1 14
(AC107799) Mus musculus clone RP23-15O3, WORKING DRAFT SEQUE... 38 6.1 7
(AX323643) Sequence 131 from Patent WO0192565. 36 6.2 2
(GM995991) Sequence 131 from Patent EP2014776. 36 6.2 2
(EK540005) 1095516054346 Global-Ocean-Sampling_GS-32-01-01-1... 36 6.2 3
(AU037827) Dictyostelium discoideum slug cDNA, clone SSE344. 42 6.2 2
(DM022322) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 38 6.4 3
(DM022194) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 38 6.4 3
(CS623690) Sequence 241 from Patent WO2006071466. 38 6.4 3
(CS623562) Sequence 113 from Patent WO2006071466. 38 6.4 3
(GQ250046) Dunaliella salina strain CCAP 19/18 chloroplast, ... 36 6.4 7
(BZ986505) PUGEG07TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 38 6.7 2
(CT573410) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.8 4
(AB183488) Oryzias latipes DNA, MHC class I region, strain: ... 36 7.1 11
(AJ879635) Bos taurus microsatellite DNA, clone RP42-249E18,... 34 7.3 2
(AP009680) Lotus japonicus genomic DNA, clone: LjT23J20, TM0... 38 7.3 5
(CU929540) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 7.5 5
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 7.6 18
(BH185628) 027_L_08-21 SmBAC1 Schistosoma mansoni genomic cl... 32 7.6 2
(AL622578) T7 end of clone 027DF04 of library SmBAC1 from st... 32 7.6 2
(CZ821418) OC__Ba0199P16.f OC__Ba Oryza coarctata genomic cl... 34 7.7 2
(AX344507) Sequence 354 from Patent WO0200926. 36 7.7 6
(AK172027) Mus musculus activated spleen cDNA, RIKEN full-le... 40 7.7 2
(DW721930) CC_060TE_FL20_G07 60-day-old common carp testis (... 32 7.7 2
(AL138682) Human DNA sequence from clone RP11-138D23 on chro... 34 8.1 9
(AB009056) Arabidopsis thaliana genomic DNA, chromosome 5, P... 32 8.3 5
(FF500000) G709P5101RD8.T0 Acorn worm normalized neurula pEx... 40 8.6 2
(AG167543) Pan troglodytes DNA, clone: RP43-035K08.T7. 36 8.6 2
(CR385024) Zebrafish DNA sequence from clone CH211-202G4 in ... 32 9.0 8
(FF634231) G825P564RE4.T0 Acorn worm normalized gastrula pEx... 40 9.1 2
(EJ034220) 1095454064530 Global-Ocean-Sampling_GS-26-01-01-1... 40 9.2 2
(AC113929) Homo sapiens chromosome 3 clone RP11-372O2, *** S... 38 9.3 5
(CG348049) OGXAQ76TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 38 9.3 2
(AC214690) Populus trichocarpa clone POP015-M02, complete se... 36 9.5 8
(CR538722) M.truncatula DNA sequence from clone MTH2-11A20 o... 38 9.6 6
(BZ574522) msh2_371.y2 msh Pseudomonas aeruginosa genomic cl... 34 9.6 3
(AC144475) Medicago truncatula clone mth2-11a20, WORKING DRA... 38 9.6 6
(CW004045) ZMMBLa0003D21.f ZMMBLa Zea mays genomic clone ZMM... 38 9.8 2
(FN359150) Schistosoma mansoni genome sequence supercontig S... 42 9.8 4
(DX829312) ZMMBLb0008N14.r ZMMBLb Zea mays genomic clone ZMM... 38 9.9 2
(AX344552) Sequence 3 from Patent WO0200932. 34 9.9 9
>(BJ434388) Dictyostelium discoideum cDNA clone:ddv16p18, 3' end,
single read.
Length = 748
Score = 1070 bits (540), Expect = 0.0
Identities = 540/540 (100%)
Strand = Plus / Minus
Query: 439 ttttcagatgaagaaaaagatataatgaaaaatttaccaaataaagaatatatgattagt 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ttttcagatgaagaaaaagatataatgaaaaatttaccaaataaagaatatatgattagt 604
Query: 499 aatgaaaaatcaatattacttggattggttgatataatttattcatatgcatataatgaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aatgaaaaatcaatattacttggattggttgatataatttattcatatgcatataatgaa 544
Query: 559 agagttaatatgggttatgaaaatattgaatcagcttggaacatttgtaaattgtcaggt 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agagttaatatgggttatgaaaatattgaatcagcttggaacatttgtaaattgtcaggt 484
Query: 619 acattatcatgtcttgataatttttataatttatcatcagttttagaatgttgttttaag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 acattatcatgtcttgataatttttataatttatcatcagttttagaatgttgttttaag 424
Query: 679 agatcattaacgttcccactttatcgtagttggttattatcagaacgtgttcttagagat 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agatcattaacgttcccactttatcgtagttggttattatcagaacgtgttcttagagat 364
Query: 739 acaaaacaaattttccaattaggaaaaagatcacttttaaaatgtttattagatattaaa 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 acaaaacaaattttccaattaggaaaaagatcacttttaaaatgtttattagatattaaa 304
Query: 799 aagaaattagaatcttcagaatttaaatactacttaaatagattatatattgatgattat 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aagaaattagaatcttcagaatttaaatactacttaaatagattatatattgatgattat 244
Query: 859 tgtatttggttacaacatgcaagtaaaaagaaattaaaatcattacgtaataaattatct 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtatttggttacaacatgcaagtaaaaagaaattaaaatcattacgtaataaattatct 184
Query: 919 gaatatgaaatgaaaaagtcaatgatatcatggccattagaagaatatgaaaaattagtt 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gaatatgaaatgaaaaagtcaatgatatcatggccattagaagaatatgaaaaattagtt 124
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,267,083,188
Number of extensions: 84681865
Number of successful extensions: 7707884
Number of sequences better than 10.0: 179
Length of query: 1100
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1076
Effective length of database: 104,103,628,548
Effective search space: 112015504317648
Effective search space used: 112015504317648
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home