Dictyostelium discoideum cDNA Contig-U10062-1

Assembled

Chromosomal Location of Contig-U10062-1

Sequence Contig-U10062-1

AAATTAATTT TTTATTTTTT TGAAACAAAA TTTTAAAACA AAGCAAGTTT
GTATTTGTGT ATATATATGA TTATATAAAT ATCAATTTTT TGGTTTTCTA
TTTTTTATAT ATATATATTT TTTTATTTAT TTATGTCAAA TTATAATAAT
AACAATAATG ATATACCAAT TTTAAAAAAC AATGTAAAAC CTCGTCAATA
TCAAGAAGAT GCATTCAATC AATGTATTAG TAGAAATACG ATTTTAGTTT
TACCAACTGG TACTGGTAAA ACTTTAGTAT CAATTTTAAC ATTTTTAAAA
ATGTTTGAAA TAAATGAAAA AAAAAATAAT GATAAAGTTG CATTATTTTT
AGTAAATAAT ATTTTATTAG GAAAACAACA AACCGAGACG ATAAAGAATT
TAACTGATAA GAGAGTAATG GTTTTAAGTG GAGACGATTT ATCATTTCAA
ACTAAAAAGA AAAACTATGA TATAGTTGTT GCAACGCCAC AGATTTTAAT
GAATTTAATT AATAAGAATA AAATTAGAAT TGATAATTTT CATTTCATAA
TTTTCGATGA AGTTCATAAT GCTACTGGTT TGGATAATTA TTGCAAGATC
ATGTCTTTAG TTAAAAATTT AGATCCACCA TTTAGACCAA GAATCCTTGG
TTTAACTGCA TCGGTTTTAA AGAACGCGTC AAATTATACC ACTGAAAGAG
CAACCAATGA AATTAAAAAG TTGGAAGATA TAATGTTATC AAAAATCTAT
TGTCCATTAA TTGAAATATT TAAAGATCAA CAACAACAAC AACAACAACA
ACAACAACAA CATCATCATC ATCAATCACC TAATTTTGAA ATTTATGAAC
CATCTATTCA ACAAACTAAA TTAACTTCAA TCATTTCAAA ATTAATCATT
GATAAAACTA GATATCTCTC AAAGAAAAAT GGTCATAAAG ATGTAAAATT
GGAACAAATT GAACTTCCAA TTTTAAAATT CATTCAATCA TTATCAAGTT
TAAAACCAAA ATTAACTTCA GAAAGAGATT CAAGTGAATA TGCTACAATC
GTTAATTTAT GTAATAGTTT AACAACATTA TCAATTGAAG GACCACAACA
ATGTTTAACT TCAATTACTG ATGGTTTTGT AAATGGTATA ATTTATCAAC
AATTAATAGA TTATGATTCA GAAGAAAATC AACAACAACA AGAAGAAGAA
GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA
AGAAGATGAA GAAGAAGGAG AAGATGAAGA TGAAGATGAA GAAGAAGGAG
ATGAAGATGA TAATAATAAA CATAAAAATA ATAATGTCAG TGGGAAAAAA
AGACCAAATT TAGACNCTGC TTGCAGAACC A

Translated Amino Acid Sequence Contig-U10062-1

klifyffetkf*nkaslylciymii*ISIFWFSIFYIYIFFYLFMSNYNNNNNDIPILKN
NVKPRQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNN
ILLGKQQTETIKNLTDKRVMVLSGDDLSFQTKKKNYDIVVATPQILMNLINKNKIRIDNF
HFIIFDEVHNATGLDNYCKIMSLVKNLDPPFRPRILGLTASVLKNASNYTTERATNEIKK
LEDIMLSKIYCPLIEIFKDQQQQQQQQQQQHHHHQSPNFEIYEPSIQQTKLTSIISKLII
DKTRYLSKKNGHKDVKLEQIELPILKFIQSLSSLKPKLTSERDSSEYATIVNLCNSLTTL
SIEGPQQCLTSITDGFVNGIIYQQLIDYDSEENQQQQEEEEEEEEEEEEEEEEEEEEEDE
EEGEDEDEDEEEGDEDDNNKHKNNNVSGKKRPNLDXACRT

Homology Contig-U10062-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U10062-1 (Contig-U10062-1Q) /CSM_Contig/Conti...  1235  0.0
Contig-U08674-1 (Contig-U08674-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U03476-1 (Contig-U03476-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U12492-1 (Contig-U12492-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12185-1 (Contig-U12185-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U08303-1 (Contig-U08303-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U04005-1 (Contig-U04005-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U02098-1 (Contig-U02098-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U01158-1 (Contig-U01158-1Q) /CSM_Contig/Conti...    42  0.002

Homology Contig-U10062-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ435449) Dictyostelium discoideum cDNA clone:ddv27l03, 3' ...   696   0.0    3
(BJ416745) Dictyostelium discoideum cDNA clone:ddv27l03, 5' ...   329   0.0    4
(BJ374417) Dictyostelium discoideum cDNA clone:ddc7p13, 3' e...   515   e-162  3
(BJ360756) Dictyostelium discoideum cDNA clone:ddc7p13, 5' e...   299   e-107  3
(U30821) Cyanophora paradoxa cyanelle, complete genome.            40   3e-04  9
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    46   7e-04  16
(AC208806) Heliconius erato clone BBAM-48A16, WORKING DRAFT ...    34   0.001  7
(AU075028) Dictyostelium discoideum slug cDNA, clone SSM766.       40   0.002  4
(AM474466) Vitis vinifera contig VV78X010502.3, whole genome...    42   0.003  4
(EK063180) 1092960100142 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.005  3

Homology Contig-U10062-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AP003416_15(AP003416|pid:none) Oryza sativa Japonica Group genom...    96   3e-18
AM920436_689(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    94   9e-18
CP000743_130(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    93   3e-17
(Q2U6C4) RecName: Full=Dicer-like protein 1; Includes:   RecName...    92   3e-17
DQ479970_1(DQ479970|pid:none) Arabidopsis thaliana dicer-like 2 ...    90   2e-16
(A1DE13) RecName: Full=Dicer-like protein 1; Includes:   RecName...    89   3e-16
AC117075_21(AC117075|pid:none) Dictyostelium discoideum chromoso...    87   2e-15
AY386968_1(AY386968|pid:none) Bos taurus dicer (dicer) mRNA, com...    86   2e-15
AC133003_3(AC133003|pid:none) Oryza sativa chromosome 3 BAC OSJN...    86   3e-15
AF187317_1(AF187317|pid:none) Arabidopsis thaliana CAF protein (...    86   3e-15