<Clone: Contig-U10030-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U10030-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U10030-1

< more Chromosomal info >

Chromosome Number 4
Length 5430582
Start Poin 2,174,711
End Point 2,173,812
Strand MINUS

Sequence Contig-U10030-1

TATTTATAAT ACACCAATTA CAGTACTTGA TGCAATGAAA TCATCACCAA
AAGAAGAGGA GATGATAACA GTTTCAGCAG AAATTCCAAC CATTTTCTTT
GCTGTAGAAT TGGAAGAATC TTTTAAAACT GCCAAAGAAA AAGGTATTCC
ACATCTTTTA AAAGTTTGCA TTGAATTCAT TTCAAGAAGA AAAAATATTG
AAGGAATCTT TAGGATTAGC GGATCAAAAT TTTTAATCGA TGAAATTCAA
TCAAAATTCG ATAAAGGTTT AATTACTTCA GTTGAAGATT TAGATCCAAA
TTGGATTTAT GAAGTTGCAT GTATTTTCAA ATCATATTTT AGATATTTAC
CTCATTCAGT TATTCCAGAT GAACAAATTA CAGAATTTTA TAGAATTCAA
AATAATATTA CAGATGCAAC TGAAAAAGCA GCAGCATTAA AAGCAGTTGT
TAATTCAATT CCAAATTTCC AATATACAAT TCTTTATGAA TGTATATCTT
TATTACATGA TATTTCATTA AACTCTAAAG AAAATTTAAT GACTCCAAGT
AATTTATCAA TTGTATATGG CCCTAGTTTA TTAAGACCAA ATATTGAAAA
AGGTGACATC CAAGAAATTG CAAATGCAAA TACTATTGTA TTTAATTTAA
TTTCATTCTT TCAACAAATT TTTATCAAAA ATCCTGATCC TTCAATTTTA
GAGATTGAAC ATCCAATTAC TCCAATTAAA CCAATGATTC AAAAATAATA
ATAATAATTA TAATAATAAC AAAAAAAAAA AAAATCTATA ACAGTTGTAC
ATTTACTCTC ATATATATAT ATATTTACAA ATTATTTTTT CTAAACAATC
TAATATGTTA TTAGGGACGA TATAAAAAAA AAAAAAAATA AAATAAAAA

Translated Amino Acid Sequence Contig-U10030-1

<All Frames> 
IYNTPITVLDAMKSSPKEEEMITVSAEIPTIFFAVELEESFKTAKEKGIPHLLKVCIEFI
SRRKNIEGIFRISGSKFLIDEIQSKFDKGLITSVEDLDPNWIYEVACIFKSYFRYLPHSV
IPDEQITEFYRIQNNITDATEKAAALKAVVNSIPNFQYTILYECISLLHDISLNSKENLM
TPSNLSIVYGPSLLRPNIEKGDIQEIANANTIVFNLISFFQQIFIKNPDPSILEIEHPIT
PIKPMIQK****l***qkkkksitvvhllsyiyiftnyff*ti*yvirddikkkknkik


Homology Contig-U10030-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U10030-1 (Contig-U10030-1Q) /CSM_Contig/Conti...  1473  0.0
Contig-U14882-1 (Contig-U14882-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U09189-1 (Contig-U09189-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U08315-1 (Contig-U08315-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U04529-1 (Contig-U04529-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U14684-1 (Contig-U14684-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U12161-1 (Contig-U12161-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11646-1 (Contig-U11646-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11493-1 (Contig-U11493-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U11452-1 (Contig-U11452-1Q) /CSM_Contig/Conti...    34  0.25


Homology Contig-U10030-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ435137) Dictyostelium discoideum cDNA clone:ddv26p02, 3' ...  1447   0.0    1
(BJ346007) Dictyostelium discoideum cDNA clone:dda29d24, 3' ...  1158   0.0    1
(AU037784) Dictyostelium discoideum slug cDNA, clone SSE288.     1057   0.0    1
(AU262425) Dictyostelium discoideum vegetative cDNA clone:VS...   902   0.0    3
(C84766) Dictyostelium discoideum slug cDNA, clone SSF555.        793   0.0    3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   3e-05  21
(AE017308) Mycoplasma mobile 163K complete genome.                 34   6e-04  18
(EJ624978) 1092963140511 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.006  3
(AC180474) Strongylocentrotus purpuratus clone R3-3100E24, W...    42   0.024  3
(AC112198) Homo sapiens chromosome 5 clone RP11-45H22, compl...    52   0.040  1


Homology Contig-U10030-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AF159851_1(AF159851|pid:none) Homo sapiens Rho GAP p190-A mRNA, ...    89   2e-16
BC035541_1(BC035541|pid:none) Mus musculus glucocorticoid recept...    89   3e-16
(Q91YM2) RecName: Full=Glucocorticoid receptor DNA-binding facto...    89   3e-16
BX005226_1(BX005226|pid:none) Zebrafish DNA sequence from clone ...    88   3e-16
BT072468_1(BT072468|pid:none) Salmo salar clone ssal-rgf-526-265...    88   3e-16
AK298356_1(AK298356|pid:none) Homo sapiens cDNA FLJ56603 complet...    88   4e-16
(Q9NRY4) RecName: Full=Glucocorticoid receptor DNA-binding facto...    88   4e-16
(P83509) RecName: Full=Glucocorticoid receptor DNA-binding facto...    88   4e-16
AB007925_1(AB007925|pid:none) Homo sapiens mRNA for KIAA0456 pro...    87   1e-15
AK293335_1(AK293335|pid:none) Homo sapiens cDNA FLJ61210 complet...    87   1e-15


<Clone: Contig-U10030-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home