<Clone: Contig-U09944-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U09944-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U09944-1

< more Chromosomal info >

Chromosome Number 5
Length 5062330
Start Poin 3,809,540
End Point 3,810,682
Strand PLUS

Sequence Contig-U09944-1

GCTCATATTT TTACCAATTT TATAAAAATA AAAATAATTA TTTTATTATT
AAAATGATTA AATCACCAAT TAAAGTTAAA TTATCATCAA CAGTCATAGT
TTTATTAAAA TGGGGAGTTG ATAAATTACC AAAATCAATT AATAAGAAAC
CATTAAAAAA TTATGATTAT AGAGTAATGT TAGTTAAAAG ATCAAATCAA
ATTAAATTCT TTCCATCAGC ACATGTTTTT CCAGGTGGTG CAGTTGATGA
AAATGATAAT TCTAAAGAAT GGGAACAAGT TATTGAAAAA CCAATACCAT
CAAATCTTTC AATTAGAATT AGTGCATTAA GAGAAATCTT TGAAGAAACT
AATTTCTTTT TGGACAAGAA TGAAAAATTA ATAAATGATA AAAATAAACC
AATAATTGAA AAACTTCAAA GTGATTTAAT GAATAAAGAA ACTTCAAAAA
CTAATAACTT TTTATTAAAT TTCATTAAAG ATAGTGGTAT TAAATTAAAA
CTTGACCAAC TATATCAATG GGCAAGATGG ATAACACCAA TATTAGGACC
AAAACAAACT CATAGATTTG ATACATATTT TTATGTTATT CCAATTTATC
AATATCCTGA ATCATGTAAA ATTGATGGTA CAGAAAATGT TGAAATGGAT
TGGCTTTCAC CTGAAGAAGC ATTAGAAGAA CATAGAATCG GTAAAATTAG
TTTACCACCA CCAACTTGGT TTACATTTCA TCAACTTTCA AAATGTCATA
CTATCGATCA AGTTATTGAA TTAGCTAAAG AAAGAGACTC TTTAGATATT
TTATATGATC CAATAATGAC AAAACCAACA ATACCTTCAA ATGCATCAAC
AAATTTACCA CAAGAAAGAT ATCAAGTTAA GTTTTATCTG GTGACTATAT
TTATGAACAA GAAAAACAAA AACAACAACA ACAACAACAA TCTTCTGATT
CTTCAACAAA TCCAAATTCA AATTCAAATC CAAATCCAAA TCTAAATCCA
AGTCATAAAA ATAGAATTAT AACACGTAGT AGAATTGGCG ATTTAAATGA
TCAATTCTCT TGGATTTATG AATATCAAAA TAATATTCCT GGCTCGGTTG
ATAGTCAAAT TGATGGTGCC AATACAATTT TACCACCAAA AC

Translated Amino Acid Sequence Contig-U09944-1

<All Frames> 
SYFYQFYKNKNNYFIIKMIKSPIKVKLSSTVIVLLKWGVDKLPKSINKKPLKNYDYRVML
VKRSNQIKFFPSAHVFPGGAVDENDNSKEWEQVIEKPIPSNLSIRISALREIFEETNFFL
DKNEKLINDKNKPIIEKLQSDLMNKETSKTNNFLLNFIKDSGIKLKLDQLYQWARWITPI
LGPKQTHRFDTYFYVIPIYQYPESCKIDGTENVEMDWLSPEEALEEHRIGKISLPPPTWF
TFHQLSKCHTIDQVIELAKERDSLDILYDPIMTKPTIPSNASTNLPQERYQVKFYLVTIF
MNKKNKNNNNNNNLLILQQIQIQIQIQIQI*iqvikiel*hvvelai*minslgfmniki
iflarlivklmvpiqfyhqn


Homology Contig-U09944-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U09944-1 (Contig-U09944-1Q) /CSM_Contig/Conti...   973  0.0
Contig-U11673-1 (Contig-U11673-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11949-1 (Contig-U11949-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11452-1 (Contig-U11452-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U06787-1 (Contig-U06787-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U01045-1 (Contig-U01045-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12195-1 (Contig-U12195-1Q) /CSM_Contig/Conti...    36  0.081
Contig-U11727-1 (Contig-U11727-1Q) /CSM_Contig/Conti...    36  0.081
Contig-U11166-1 (Contig-U11166-1Q) /CSM_Contig/Conti...    36  0.081
Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Conti...    36  0.081


Homology Contig-U09944-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(C92050) Dictyostelium discoideum slug cDNA, clone SSC118.        654   0.0    3
(BJ339700) Dictyostelium discoideum cDNA clone:dda10g02, 3' ...   846   0.0    2
(BJ436069) Dictyostelium discoideum cDNA clone:ddv29c23, 3' ...   846   0.0    2
(BJ323324) Dictyostelium discoideum cDNA clone:dda10g02, 5' ...   563   0.0    2
(BJ417185) Dictyostelium discoideum cDNA clone:ddv29c23, 5' ...   555   e-165  2
(AU071623) Dictyostelium discoideum slug cDNA, clone SSC118.      353   1e-92  1
(AE017308) Mycoplasma mobile 163K complete genome.                 40   0.45   13
(AP007905) Lotus japonicus genomic DNA, chromosome 3, clone:...    42   0.72   4
(BX511178) Zebrafish DNA sequence from clone DKEY-221H15 in ...    48   0.79   1
(HB534770) Sequence 40412 from Patent WO2009089296.                48   0.79   1


Homology Contig-U09944-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


BC162737_1(BC162737|pid:none) Danio rerio similar to nudix (nucl...    97   1e-18
A87537(A87537) conserved hypothetical protein CC2322 [imported] ...    90   2e-16
CP001620_1210(CP001620|pid:none) Corynebacterium kroppenstedtii ...    87   1e-15
BX572603_105(BX572603|pid:none) Rhodopseudomonas palustris CGA00...    87   1e-15
CP000283_3097(CP000283|pid:none) Rhodopseudomonas palustris BisB...    87   1e-15
F87753(F87753)protein C43E11.7 [imported] - Caenorhabditis elegans     87   1e-15
CP000463_3495(CP000463|pid:none) Rhodopseudomonas palustris BisA...    87   1e-15
(P91148) RecName: Full=Putative nudix hydrolase 7;          EC=3...    87   1e-15
(Q5ZL13) RecName: Full=Nucleoside diphosphate-linked moiety X mo...    85   4e-15
CP000656_4244(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...    85   5e-15


<Clone: Contig-U09944-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home