Homology Contig-U09944-1 vs DNA
Query= Contig-U09944-1 (Contig-U09944-1Q) /CSM_Contig/Contig-U09944-1Q.Seq.d
(1142 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C92050) Dictyostelium discoideum slug cDNA, clone SSC118. 654 0.0 3
(BJ339700) Dictyostelium discoideum cDNA clone:dda10g02, 3' ... 846 0.0 2
(BJ436069) Dictyostelium discoideum cDNA clone:ddv29c23, 3' ... 846 0.0 2
(BJ323324) Dictyostelium discoideum cDNA clone:dda10g02, 5' ... 563 0.0 2
(BJ417185) Dictyostelium discoideum cDNA clone:ddv29c23, 5' ... 555 e-165 2
(AU071623) Dictyostelium discoideum slug cDNA, clone SSC118. 353 1e-92 1
(AE017308) Mycoplasma mobile 163K complete genome. 40 0.45 13
(AP007905) Lotus japonicus genomic DNA, chromosome 3, clone:... 42 0.72 4
(BX511178) Zebrafish DNA sequence from clone DKEY-221H15 in ... 48 0.79 1
(HB534770) Sequence 40412 from Patent WO2009089296. 48 0.79 1
(GP393680) Sequence 40412 from patent US 7511127. 48 0.79 1
(GP106855) Sequence 40412 from patent US 7468248. 48 0.79 1
(BX890567) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.79 1
(BX511015) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.79 1
(AC211366) Zea mays chromosome 3 clone CH201-250J1; ZMMBBc02... 48 0.79 1
(AC210992) Zea mays chromosome 3 clone CH201-485L22; ZMMBBc0... 48 0.79 1
(AC203896) Zea mays chromosome 3 clone CH201-105I7; ZMMBBc01... 48 0.79 1
(AC171243) Bos taurus clone CH240-300O20, WORKING DRAFT SEQU... 48 0.79 1
(CG416270) ZMMBBc0023F22f ZMMBBc (EcoRI) Zea mays subsp. may... 48 0.79 1
(AM459463) Vitis vinifera contig VV78X092365.12, whole genom... 46 1.1 2
(ED799867) MG__Ba0069B18r MG__Ba Mimulus guttatus genomic, g... 46 1.2 2
(FJ789640) Brassica rapa subsp. pekinensis, pooled multiple ... 36 1.3 2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 32 1.3 10
(AQ515108) HS_5199_A1_D11_SP6E RPCI-11 Human Male BAC Librar... 38 2.3 3
(AF337032) Aphidius ervi clone 124 microsatellite sequence. 40 3.1 2
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg... 46 3.1 1
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg... 46 3.1 1
(AC191722) Pan troglodytes BAC clone CH251-584D18 from chrom... 46 3.1 1
(AC190231) Pan troglodytes BAC clone CH251-739F15 from chrom... 46 3.1 1
(AM482768) Vitis vinifera contig VV78X135571.4, whole genome... 46 3.1 1
(AC123901) Homo sapiens chromosome 3 clone RP11-952G4, compl... 46 3.1 1
(AC099051) Homo sapiens chromosome 3 clone RP11-416A9, compl... 46 3.1 1
(AC083869) Homo sapiens chromosome 7 clone RP11-733N14, comp... 46 3.1 1
(AC009541) Human Chromosome 7 clone RP11-233L24, complete se... 46 3.1 1
(AC002981) Homo sapiens Xp22 BAC GS279A12 (Genome Systems) c... 46 3.1 1
(AC216050) Zea mays chromosome 9 clone CH201-221P3; ZMMBBc02... 46 3.1 1
(AC211852) Zea mays chromosome 9 clone ZMMBBb-411A15; ZMMBBb... 46 3.1 1
(BH163596) ENTSM29TR Entamoeba histolytica Sheared DNA Entam... 46 3.1 1
(AQ581262) RPCI-11-448G19.TV RPCI-11 Homo sapiens genomic cl... 46 3.1 1
(FH909307) CHO_ONF060xj24f1.ab1 CHO_ONF Nicotiana tabacum ge... 46 3.1 1
(EJ206219) 1092344350712 Global-Ocean-Sampling_GS-27-01-01-1... 46 3.1 1
(ED998008) MUGQ_CH252P166A20Sp6_CN205_080 CHORI-252 Vervet M... 46 3.1 1
(EC989582) WIN1137.C21_B01 Muscat Hamburg pre-veraison berry... 46 3.1 1
(EC956156) WIN0572.C21_N19 Cab Sauv flower, leaf and root no... 46 3.1 1
(EC950183) WIN0548.C21_O17 Cab Sauv flower, leaf and root no... 46 3.1 1
(EC937263) WIN0514.C21_P16 Cab Sauv flower, leaf and root no... 46 3.1 1
(CK311978) SB02010B1G06.f1 normalized Keck-Tagu Library SB02... 46 3.1 1
(CD800732) EST 13977 Green Grape (harvested at 5 p.m.) Pedic... 46 3.1 1
(CD799170) EST 12831 Green Grape (harvested at 9 a.m.) Pedic... 46 3.1 1
(BU101572) PRODG1GID84F1 Compugen_targeted_mRNA_sequencing H... 46 3.1 1
(BF987928) QV4-GN0122-131000-467-g03 GN0122 Homo sapiens cDN... 46 3.1 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 3.1 1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 46 3.1 1
(EK311393) 1095462398444 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.2 2
(AC224491) Bos taurus clone CH240-483G16, WORKING DRAFT SEQU... 44 3.7 3
(AJ318366) Parancistrus aurantiacus mitochondrial partial tR... 44 4.1 2
(AR535671) Sequence 233 from patent US 6737248. 40 5.0 3
(AR354115) Sequence 233 from patent US 6593114. 40 5.0 3
(FI915762) 1061063643019_TR POTATO-F-01-40KB Solanum phureja... 34 5.7 3
(AC132445) Mus musculus BAC clone RP23-173F23 from chromosom... 32 5.8 2
(BX005233) Mouse DNA sequence from clone RP23-214I11 on chro... 32 5.8 2
(AC012048) Homo sapiens chromosome 10 clone RP11-43N22, comp... 34 5.8 2
(AC099325) Oryza sativa chromosome 10 BAC OSJNBb0048O22 geno... 44 6.2 6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 6.8 13
(CL509390) SAIL_811_H03.v3 SAIL Collection Arabidopsis thali... 32 7.7 3
(EJ743909) 1092962039083 Global-Ocean-Sampling_GS-30-02-01-1... 32 7.8 2
(ER385656) 1094422010897 Global-Ocean-Sampling_GS-34-01-01-1... 34 7.9 3
(CU101178) Equus caballus GSS, BAC clone CH241-206O1, T7 end... 34 8.2 2
(CP000049) Borrelia turicatae 91E135, complete genome. 32 8.2 17
(EJ729611) 1092960055448 Global-Ocean-Sampling_GS-30-02-01-1... 36 8.8 2
(AC114394) Drosophila melanogaster, chromosome 4, region 101... 34 9.2 4
(AC223139) Bos taurus clone CH240-428D3, WORKING DRAFT SEQUE... 44 9.7 4
(DQ889678) Bacillus cereus strain AH818 plasmid pPER272, com... 42 9.9 6
(DQ889677) Bacillus cereus strain AH820 plasmid pPER272, com... 42 9.9 6
(CP001285) Bacillus cereus AH820 plasmid pAH820_272, complet... 42 9.9 6
>(C92050) Dictyostelium discoideum slug cDNA, clone SSC118.
Length = 599
Score = 654 bits (330), Expect(3) = 0.0
Identities = 330/330 (100%)
Strand = Plus / Plus
Query: 549 ccaaaacaaactcatagatttgatacatatttttatgttattccaatttatcaatatcct 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaaaacaaactcatagatttgatacatatttttatgttattccaatttatcaatatcct 60
Query: 609 gaatcatgtaaaattgatggtacagaaaatgttgaaatggattggctttcacctgaagaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaatcatgtaaaattgatggtacagaaaatgttgaaatggattggctttcacctgaagaa 120
Query: 669 gcattagaagaacatagaatcggtaaaattagtttaccaccaccaacttggtttacattt 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcattagaagaacatagaatcggtaaaattagtttaccaccaccaacttggtttacattt 180
Query: 729 catcaactttcaaaatgtcatactatcgatcaagttattgaattagctaaagaaagagac 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catcaactttcaaaatgtcatactatcgatcaagttattgaattagctaaagaaagagac 240
Query: 789 tctttagatattttatatgatccaataatgacaaaaccaacaataccttcaaatgcatca 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctttagatattttatatgatccaataatgacaaaaccaacaataccttcaaatgcatca 300
Query: 849 acaaatttaccacaagaaagatatcaagtt 878
||||||||||||||||||||||||||||||
Sbjct: 301 acaaatttaccacaagaaagatatcaagtt 330
Score = 258 bits (130), Expect(3) = 0.0
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1013 agaattataacacgtagtagaattggcgatttaaatgatcaattctcttggatttatgaa 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agaattataacacgtagtagaattggcgatttaaatgatcaattctcttggatttatgaa 519
Query: 1073 tatcaaaataatattcctggctcggttgatagtcaaattgatggtgccaatacaatttta 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tatcaaaataatattcctggctcggttgatagtcaaattgatggtgccaatacaatttta 579
Query: 1133 ccaccaaaac 1142
||||||||||
Sbjct: 580 ccaccaaaac 589
Score = 54.0 bits (27), Expect(3) = 0.0
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 879 aagttttatctggtgactatatttatg 905
|||||||||||||||||||||||||||
Sbjct: 326 aagttttatctggtgactatatttatg 352
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,341,258,370
Number of extensions: 84492803
Number of successful extensions: 6985966
Number of sequences better than 10.0: 75
Length of query: 1142
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1118
Effective length of database: 104,103,628,548
Effective search space: 116387856716664
Effective search space used: 116387856716664
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home