Dictyostelium discoideum cDNA Contig-U09743-1

Assembled

Chromosomal Location of Contig-U09743-1

Sequence Contig-U09743-1

GTTGGCCTAC TGGAAAAAAC AAAACTAAAA CAAAAACAAA AACAAAACAA
AATATACACA TAATAATGAA AATTGCAATT GAAGGATGTT GTCATGGTGA
AATTGAAACA ATTTATAATT CAATAATTAA TATAGAAAAG GTTACAGGAA
CAAAGGTTGA TTTGTTATTA TGTTGTGGCG ATTATGAAGC ATTGAGGAAT
TTACATGATT TAAAATCATT AGCAGTTAAA CCAAAATATA AAACTATGGG
ATCATTTTAT AAATATTATA GTGGTGAACT TAAAGCACCA ATGTTAACAT
TAGTGATTGG TGGTAATCAT GAATCGTCCA ATCGTTTCTC TGAAATCAAT
AATGGTGGTT GGTTATGCGA GAATATCTAT TTCATGGGCA GATCAAATGT
TGTTCAATTT GGTGGTATCC GTATTGGTGG TTTGTCAGGT ATCTTTAAGG
AATACGATTA TCAAAAAGGT TATTTTGAAA CCAAACCATT CTCTGACGAC
CATCTACGTA GTGTATACCA TATTAGAGAA TTGGATATTT TCAAATTTAT
GCAAATCACC GATCCAACAC TAGAAATTAT CATCTCTCAT GATTGGCCAA
TGGGTATAAT TGATTATGGT GATCGTAATT CATTATTACG TTATAAAA--
---------- --------NN NNNNNNNCNC AATGGNGTGT TNATTCAAAG
GAAAGGTNAA CATATTTCAG ANACATATAA TAGTCCANCT AAAAAACCAT
TAGATCCTGN NTTATTTTCA AATTTATATA CAAATGAAGA AGTTAAAAAA
GTTGAAGATA GATTTAAAGA AATTTATAAA TTTAAAAATA AAGATAATTT
AAAAGAAAAT TTTACAATTC AAGATGCATT GGAAATTAAA AAAGAAAACT
TTGTAAAGAA TACATATTGT TATAATCCAA ATTCAAACAG TCCATTATCC
AATTTACCAC CAGCATTTGA TAATCCACAA AATAAAATCT ATGATAATTT
AATAAAAATA ATAACCCAAG ATACTGAAAT TACAAATGAA ACTTTAAAAG
AATTGGATGT TTCAACCTAT TCTGGAAATT TAGAAGAATT ACAAAAAGAA
CAATTAAATC AACGTAATAA TAATAGACTT CAACAACAAC AAAATCCTCA
ACAACAACAA TACCAAGATG ATTCTGAAAT CATTCCTTGA GATTAATTTT
TTAAAAAATA

Translated Amino Acid Sequence Contig-U09743-1

WPTGKNKTKTKTKTKQNIHIIMKIAIEGCCHGEIETIYNSIINIEKVTGTKVDLLLCCGD
YEALRNLHDLKSLAVKPKYKTMGSFYKYYSGELKAPMLTLVIGGNHESSNRFSEINNGGW
LCENIYFMGRSNVVQFGGIRIGGLSGIFKEYDYQKGYFETKPFSDDHLRSVYHIRELDIF
KFMQITDPTLEIIISHDWPMGIIDYGDRNSLLRYKXXX---

---XXXXNGVXIQRKGXHISXTYNSPXKKPLDPXLFSNLYTNEEVKKVEDRFKEIYKFKN
KDNLKENFTIQDALEIKKENFVKNTYCYNPNSNSPLSNLPPAFDNPQNKIYDNLIKIITQ
DTEITNETLKELDVSTYSGNLEELQKEQLNQRNNNRLQQQQNPQQQQYQDDSEIIP*d*f
fkk

Homology Contig-U09743-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09743-1 (Contig-U09743-1Q) /CSM_Contig/Conti...  1181  0.0
Contig-U13825-1 (Contig-U13825-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U06629-1 (Contig-U06629-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U13967-1 (Contig-U13967-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U13926-1 (Contig-U13926-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U12035-1 (Contig-U12035-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U11304-1 (Contig-U11304-1Q) /CSM_Contig/Conti...    36  0.086
Contig-U09394-1 (Contig-U09394-1Q) /CSM_Contig/Conti...    36  0.086

Homology Contig-U09743-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ416494) Dictyostelium discoideum cDNA clone:ddv26i15, 5' ...  1181   0.0    1
(BJ435269) Dictyostelium discoideum cDNA clone:ddv26i15, 3' ...   396   e-167  3
(AX700694) Sequence 62 from Patent WO03012108.                    341   e-102  3
(M27713) D.discoideum Thy1 gene, complete cds.                    341   e-102  3
(AR548896) Sequence 4027 from patent US 6747137.                   46   4e-09  4
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   0.001  12
(EL603007) He_pwd_0222E01_M13R Heliconius erato pooled wing ...    42   0.004  2
(BD460216) Diagnosis of Diseases Associated with Cell Cycle.       40   0.007  4
(BD452138) Diagnosis of Diseases Associated with Cell Cycle.       40   0.007  4
(AX348557) Sequence 15 from Patent WO0202807.                      40   0.007  4

Homology Contig-U09743-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q7T3E4) RecName: Full=Lariat debranching enzyme;          EC=3....   249   2e-64
(Q6GPB8) RecName: Full=Lariat debranching enzyme A;          EC=...   246   1e-63
BT059609_1(BT059609|pid:none) Salmo salar clone ssal-rgf-501-314...   245   2e-63
(Q7ZWU9) RecName: Full=Lariat debranching enzyme B;          EC=...   243   1e-62
BT076925_1(BT076925|pid:none) Caligus rogercresseyi clone crog-e...   240   6e-62
(Q94K01) RecName: Full=Lariat debranching enzyme;          Short...   235   3e-60
(Q6AU07) RecName: Full=Lariat debranching enzyme;          EC=3....   232   2e-59
AB174178_1(AB174178|pid:none) Macaca fascicularis brain cDNA clo...   232   2e-59
(Q9UK59) RecName: Full=Lariat debranching enzyme;          EC=3....   232   2e-59
(Q923B1) RecName: Full=Lariat debranching enzyme;          EC=3....   231   5e-59