Homology Contig-U09703-1 vs DNA
Query= Contig-U09703-1 (Contig-U09703-1Q) /CSM_Contig/Contig-U09703-1Q.Seq.d
(1796 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ432811) Dictyostelium discoideum cDNA clone:ddv19m22, 3' ... 1308 0.0 1
(BJ413338) Dictyostelium discoideum cDNA clone:ddv15k03, 5' ... 1181 0.0 1
(BJ414634) Dictyostelium discoideum cDNA clone:ddv19m22, 5' ... 1162 0.0 1
(AU262771) Dictyostelium discoideum vegetative cDNA clone:VS... 965 0.0 1
(BJ433547) Dictyostelium discoideum cDNA clone:ddv22a07, 3' ... 906 0.0 1
(BJ431693) Dictyostelium discoideum cDNA clone:ddv15k03, 3' ... 757 0.0 1
(BJ435155) Dictyostelium discoideum cDNA clone:ddv26c08, 3' ... 658 0.0 2
(BJ432457) Dictyostelium discoideum cDNA clone:ddv18b20, 3' ... 293 1e-74 1
(AC107106) Rattus norvegicus clone CH230-155M2, WORKING DRAF... 52 0.080 1
(BU434958) 603219688F1 CSEQRBN10 Gallus gallus cDNA clone Ch... 52 0.080 1
(FI901521) 1061063316040_TR POTATO-F-01-40KB Solanum phureja... 38 0.24 2
(AL404164) T3 end of clone AT0AA013F04 of library AT0AA from... 50 0.32 1
(DY820697) CTOY12607.b1_N08.ab1 CTO(XYZ) dandelion Taraxacum... 50 0.32 1
(DW346769) PP_LEc0011E24f Peach shoot Prunus persica cDNA cl... 50 0.32 1
(AY240028) Lactobacillus fermentum Rlp (rlp) gene, partial c... 50 0.32 1
(GR581461) CBZZ1366.g1 CBZZ Dictyostelium purpureum 18 hr st... 40 0.38 3
(DD010735) Diagnosis of known genetic Parameters within the ... 34 0.56 2
(AX344553) Sequence 4 from Patent WO0200932. 34 0.65 2
(CT030659) Mouse DNA sequence from clone RP23-125F8 on chrom... 34 0.67 2
(AC166324) Mus musculus BAC clone RP24-500J7 from chromosome... 34 0.68 2
(EI503263) PV_GBa0124A11.r PV_GBa Phaseolus vulgaris genomic... 32 1.1 4
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 48 1.2 1
(BX294009) Neurospora crassa DNA linkage group V Cosmid cont... 48 1.2 1
(AF088907) Neurospora crassa clock-controlled gene-8 protein... 48 1.2 1
(AC188121) Trichinella spiralis chromosome UNK clone TS195-4... 48 1.2 1
(ED792332) GM_WBb0176B21.f GM_WBb Glycine max genomic clone ... 48 1.2 1
(BZ394054) EINDB45TR EI_10_12_KB Entamoeba invadens genomic ... 48 1.2 1
(BB629282) Mus musculus adult male bone cDNA, RIKEN full-len... 48 1.2 1
(GD217126) G1045P379FD22.T1 Aplysia californica Pooled Norma... 48 1.2 1
(AM285318) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 1.6 5
(FC276002) CAGN21893.rev CAGN Nematostella vectensis Nemve m... 36 1.8 2
(EJ558343) 1092959523349 Global-Ocean-Sampling_GS-29-01-01-1... 38 1.9 2
(EI435589) PV_GBa0029E03.r PV_GBa Phaseolus vulgaris genomic... 32 2.1 4
(AC105874) Rattus norvegicus clone CH230-238L12, *** SEQUENC... 32 2.4 2
(EI491095) PV_GBa0107E08.r PV_GBa Phaseolus vulgaris genomic... 32 2.5 4
(ER981015) MUGQ_CH252P304M11T7_CP485_036 CHORI-252 Vervet Mo... 32 3.3 2
(EJ641302) 1093011914180 Global-Ocean-Sampling_GS-29-01-01-1... 36 3.3 2
(EK059837) 1092960068263 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.3 2
(BZ387230) EINDD16TF EI_10_12_KB Entamoeba invadens genomic ... 36 3.3 2
(BH266426) CH230-91I11.TJ CHORI-230 Segment 1 Rattus norvegi... 32 3.3 2
(EJ644718) 1093012258120 Global-Ocean-Sampling_GS-29-01-01-1... 36 3.3 2
(GO287878) CAXN6787.fwd CAXN Teleopsis dalmanni Late larval ... 36 3.3 2
(GO286003) CAXN5477.fwd CAXN Teleopsis dalmanni Late larval ... 36 3.3 2
(GO276732) CZAC1707.rev CZAC Teleopsis dalmanni Late larval ... 36 3.3 2
(AM444890) Vitis vinifera contig VV78X065188.5, whole genome... 40 3.6 2
(AC103168) Rattus norvegicus clone CH230-54N23, *** SEQUENCI... 46 4.4 4
(CR925752) Mouse DNA sequence from clone RP24-106O24 on chro... 46 4.9 1
(AL929577) Mouse DNA sequence from clone RP23-455B1 on chrom... 46 4.9 1
(AL683873) Mouse DNA sequence from clone RP23-119G22 on chro... 46 4.9 1
(AC160062) Mus musculus 6 BAC RP23-427I18 (Roswell Park Canc... 46 4.9 1
(AC159130) Mus musculus BAC clone RP23-401J13 from chromosom... 46 4.9 1
(AC153565) Mus musculus 10 BAC RP23-228H2 (Roswell Park Canc... 46 4.9 1
(AC131708) Mus musculus BAC clone RP24-127P5 from chromosome... 46 4.9 1
(AC130546) Mus musculus BAC clone RP24-303D11 from chromosom... 46 4.9 1
(AC124316) Mus musculus chromosome 17, clone RP24-222O13, co... 46 4.9 1
(AC101349) Mus musculus chromosome 6, clone RP23-111E12, com... 46 4.9 1
(EF117807) Setaria italica clone GB-SIM-105 microsatellite s... 46 4.9 1
(AY850394) Lycopersicon esculentum cultivar Heinz1706 chromo... 46 4.9 1
(AP006146) Lotus japonicus genomic DNA, chromosome 3, clone:... 46 4.9 1
(HB442386) Sequence 255 from Patent WO2009074968. 46 4.9 1
(GC700394) Sequence 15639 from patent US 6812339. 46 4.9 1
(AP000844) Homo sapiens genomic DNA, chromosome 11q clone:RP... 46 4.9 1
(AL592044) Human DNA sequence from clone RP13-407F1 on chrom... 46 4.9 1
(AL157938) Human DNA sequence from clone RP11-544A12 on chro... 46 4.9 1
(AC006988) Homo sapiens BAC clone RP11-174I14 from 7, comple... 46 4.9 1
(AC142553) Rattus norvegicus strain Brown Norway clone CH230... 46 4.9 1
(AC141713) Apis mellifera clone CH224-56H1, *** SEQUENCING I... 46 4.9 1
(AC130616) Rattus norvegicus clone CH230-38D9, *** SEQUENCIN... 46 4.9 1
(AC129144) Rattus norvegicus clone CH230-277M19, WORKING DRA... 46 4.9 1
(AC127620) Rattus norvegicus clone CH230-455B13, WORKING DRA... 46 4.9 1
(AC122661) Rattus norvegicus clone CH230-239E4, WORKING DRAF... 46 4.9 1
(AC117017) Rattus norvegicus clone CH230-134C12, *** SEQUENC... 46 4.9 1
(AC113920) Rattus norvegicus clone CH230-15G20, WORKING DRAF... 46 4.9 1
(AC111419) Rattus norvegicus clone CH230-44G6, *** SEQUENCIN... 46 4.9 1
(AC109563) Rattus norvegicus clone CH230-23M15, *** SEQUENCI... 46 4.9 1
(AC108255) Rattus norvegicus clone CH230-29E2, *** SEQUENCIN... 46 4.9 1
(AC105465) Rattus norvegicus clone CH230-255F1, WORKING DRAF... 46 4.9 1
(AC103284) Rattus norvegicus clone CH230-125L23, WORKING DRA... 46 4.9 1
(AC097938) Rattus norvegicus clone CH230-142H4, WORKING DRAF... 46 4.9 1
(AC097135) Rattus norvegicus clone CH230-130M14, *** SEQUENC... 46 4.9 1
(CU914397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 4.9 1
(AC083885) Homo sapiens chromosome UNK clone RP11-1245A23, W... 46 4.9 1
(AP008184) Lotus japonicus genomic DNA, chromosome 3, clone:... 46 4.9 1
(AP002831) Homo sapiens genomic DNA, chromosome 11q clone:RP... 46 4.9 1
(AC191899) Ornithorhynchus anatinus clone OA_Bb-90E8, WORKIN... 46 4.9 1
(AC176818) Strongylocentrotus purpuratus clone R3-3111C17, W... 46 4.9 1
(AC012237) Homo sapiens clone RP11-16F13, WORKING DRAFT SEQU... 46 4.9 1
(AY915313) Schistosoma japonicum SJCHGC04605 protein mRNA, p... 46 4.9 1
(FM203877) Triticum aestivum GSS, clone RD-19R_H12_A_096.ab1. 46 4.9 1
(FH127120) CHO_OF3325xe06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 4.9 1
(AL231054) Tetraodon nigroviridis genome survey sequence PUC... 46 4.9 1
(CW333616) 104_831_11482044_148_36050_036 Sorghum methylatio... 46 4.9 1
(CW333615) 104_831_11482044_116_36049_036 Sorghum methylatio... 46 4.9 1
(CU190315) Equus caballus GSS, BAC clone CH241-359D2, T7 end... 46 4.9 1
(CR041783) Forward strand read from insert in 5'HPRT inserti... 46 4.9 1
(CL175473) 104_381_10892472_148_31764_072 Sorghum methylatio... 46 4.9 1
(CL175472) 104_381_10892472_116_31765_072 Sorghum methylatio... 46 4.9 1
(EB084560) 1814 CM334 Root cDNA Capsicum annuum cDNA clone R... 46 4.9 1
(DW584712) Cm_mx1_50b01_SP6 Green Shore Crab Multiple Tissue... 46 4.9 1
(DW250825) Cm_mx1_39b09_SP6 Green Shore Crab Multiple Tissue... 46 4.9 1
(DK976397) Papilio xuthus mRNA, clone: PxutEST_ftfRN18h06, 5... 46 4.9 1
(DK975801) Papilio xuthus mRNA, clone: PxutEST_ftfRN14g01, 5... 46 4.9 1
(DK974717) Papilio xuthus mRNA, clone: PxutEST_ftfN36g01, 5'... 46 4.9 1
(CX861387) SJMPAAH10.PT.bin SJA Schistosoma japonicum cDNA, ... 46 4.9 1
(CX861357) SJMPAAD12.PT.bin SJA Schistosoma japonicum cDNA, ... 46 4.9 1
(CX861350) SJMPAAC12.PT.bin SJA Schistosoma japonicum cDNA, ... 46 4.9 1
(BQ632945) ik72c09.y1 Kaestner ngn3 wt Mus musculus cDNA 5',... 46 4.9 1
(GR566129) CBTF2081.b1 CBTF Dictyostelium purpureum 12 hr ve... 46 4.9 1
(GD128549) KS25052J21 KS25 Capsicum annuum cDNA, mRNA sequence. 46 4.9 1
(FG251157) CBYF1020.g1 CBYF Cercospora zeae-maydis conidiati... 46 4.9 1
(FG251156) CBYF1020.b1 CBYF Cercospora zeae-maydis conidiati... 46 4.9 1
(EY880212) LT33-C1-003-019-E08-CT.F Tahiti lime leaf, greenh... 46 4.9 1
(EJ531809) 1092955234593 Global-Ocean-Sampling_GS-29-01-01-1... 44 5.5 2
(EJ829205) 1093017574810 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.5 2
(EY328216) CAWY1409.rev CAWY Helobdella robusta Subtracted E... 38 6.8 2
(EJ821951) 1093017541498 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.9 2
(EJ252077) 1095344039489 Global-Ocean-Sampling_GS-27-01-01-1... 38 6.9 2
(EY338406) CAWY8988.fwd CAWY Helobdella robusta Subtracted E... 38 7.1 2
(EJ565737) 1092959711843 Global-Ocean-Sampling_GS-29-01-01-1... 44 7.2 2
(EK305270) 1095462378987 Global-Ocean-Sampling_GS-31-01-01-1... 38 7.3 2
(ER433035) 1092963786109 Global-Ocean-Sampling_GS-35-01-01-1... 36 7.4 2
(EJ299629) 1095390004028 Global-Ocean-Sampling_GS-27-01-01-1... 38 7.5 2
(EJ346275) 1092963549952 Global-Ocean-Sampling_GS-28-01-01-1... 38 7.6 2
(EY328217) CAWY1409.fwd CAWY Helobdella robusta Subtracted E... 38 7.8 2
(EK311401) 1095462398452 Global-Ocean-Sampling_GS-31-01-01-1... 42 8.4 2
(EK337881) 1095467049511 Global-Ocean-Sampling_GS-31-01-01-1... 42 8.6 2
(ER322176) 1092344185513 Global-Ocean-Sampling_GS-34-01-01-1... 38 8.7 2
(AY166678) Plasmodium reichenowi reticulocyte binding-like p... 40 8.7 3
(AF324831) Plasmodium falciparum adhesive-like protein pseud... 40 9.1 3
(AC120558) Mus musculus chromosome 18, clone RP24-494K12, co... 40 9.1 5
>(BJ432811) Dictyostelium discoideum cDNA clone:ddv19m22, 3' end,
single read.
Length = 707
Score = 1308 bits (660), Expect = 0.0
Identities = 660/660 (100%)
Strand = Plus / Minus
Query: 1052 tatgactccatccgctagtattacattcttttacaatggtccacttgaagagggcgattt 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tatgactccatccgctagtattacattcttttacaatggtccacttgaagagggcgattt 648
Query: 1112 cgaattcagaaaattgttaaccggtttcctttgtccaccatcaaatccaacctgtacacc 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 cgaattcagaaaattgttaaccggtttcctttgtccaccatcaaatccaacctgtacacc 588
Query: 1172 attgggtaaagtcaccaccatggatatccaaactttaaagaaaacattctgggaagtcat 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 attgggtaaagtcaccaccatggatatccaaactttaaagaaaacattctgggaagtcat 528
Query: 1232 tagctcaatgagttatgataataatccattaagacaattcaccaaaggaagattcgttaa 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tagctcaatgagttatgataataatccattaagacaattcaccaaaggaagattcgttaa 468
Query: 1292 gaaattatctaaaaacgatgtaccaaaggctatcaacgatttctataaatatgccgtcac 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gaaattatctaaaaacgatgtaccaaaggctatcaacgatttctataaatatgccgtcac 408
Query: 1352 caatatcatcaattcaacctctttagttaaaccagaaacattgttaaatattaatcaagc 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 caatatcatcaattcaacctctttagttaaaccagaaacattgttaaatattaatcaagc 348
Query: 1412 tattttctatcatggtggtaaacaaaatcaagatagaactggttcaatcgattctccatt 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tattttctatcatggtggtaaacaaaatcaagatagaactggttcaatcgattctccatt 288
Query: 1472 caattctttccttcacagaggtgatgaagctatgtggtcatacactattgtcgctcaata 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 caattctttccttcacagaggtgatgaagctatgtggtcatacactattgtcgctcaata 228
Query: 1532 taataacactgaaaatgatccattattctctggtcttagaaaacttgtaaactctaaact 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 taataacactgaaaatgatccattattctctggtcttagaaaacttgtaaactctaaact 168
Query: 1592 ctcttcaattggtgataaattaaataataactatccagatgatgaatttgaagattggca 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ctcttcaattggtgataaattaaataataactatccagatgatgaatttgaagattggca 108
Query: 1652 aaccggactctatgtcaccaaatcaaattataaaaaacttcaagaaattaaaggaaaata 1711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 aaccggactctatgtcaccaaatcaaattataaaaaacttcaagaaattaaaggaaaata 48
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,921,515,068
Number of extensions: 114743916
Number of successful extensions: 10010079
Number of sequences better than 10.0: 133
Length of query: 1796
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1772
Effective length of database: 104,103,628,548
Effective search space: 184471629787056
Effective search space used: 184471629787056
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home