<Clone: Contig-U09697-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U09697-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U09697-1

< more Chromosomal info >

Chromosome Number 5
Length 5062330
Start Poin 2,176,184
End Point 2,177,480
Strand PLUS

Sequence Contig-U09697-1

TGAAATGAAA CATACCTTGG TATAATGAAT TATAGTTAAA CCATGATAAA
CAATATAAAT AGAATAAAGA AAACTTATAA TACATTTTTA AATGTTAATA
AATTAAGATA TTCAACCTCA ATAATATCTT CAAATATTTT AGAAAATGAT
AATAATAATA TTGATGATTT TGAACAGGTT TTAAAGAGTA CAAAAGTAAG
AATGCCAACA TCAGCTTTAT TATTACCAAA GAAACCTAAA GTTTGTATTG
GTATGTCTGG TGGCGTAGAT TCAACAATTA CTGCAAAATT ATTAAAATTA
CAGGGTTTTG ATGTTACTTG GTGTTTTTAT TAAAAGTTGG GATGAAGTTG
AAGATACTGG TAGATGCCAA GGCGAACGTG ATTGGAAAGA TGCTTTAGAA
GCTTCAAATT TTTTAGATAT ACCAATGTAT AAAGCAGATT TTGTAAAAGA
TTATTGGAAT AGAGTTTTTG TAGATTTTTT AAAAGATTAT AAAAATGGGT
TGACCCCAAA TCCAGATGTA TGGTGTAATA GAGAAATTAA ATTTGATTTA
TTTTTTGATT TTGCAAAAGA GAATTTTGGT GTTGATTATA TTGCAACAGG
---------- ---------- NNNNNNNNNA TTCTTTTTAT GTATGACAAA
AGGTGAAAGA TTAAAACAAG CAATCTTCCC AATTGGTGGA TTTACAAAGG
AAAATATTGT TTCATTTGCA AAAACTATAC CAAATTTCTC AAAAATTACA
TCAAAAAAAT CAAGTAGAGG AATTTGTTTC ATTGGAAAAA GACCTTTACC
TGATTTTCTA TCACAATATA TGACTTTAAA ACCTGGAGAT TTCTTTGATA
TTTCAACAAA CTCATTCATT AAAGGTAAAA AACACAAAGG TTCAGTTTGT
TATACAATGG GTCAAAAAGC AAATATTGAT TCTTTATCAG AAAGGTATTT
TATAGTTAGA TCAGATATTG AAAGAAATAT TGTATATGTT TGTCCAGAAT
CACAATTTGA TCAATTTTCA CTTTATTATG AATTTAATAC ACATTCATTC
AATTGGATAA ATGAAATACC GACTGAAGTT AAATCAGAAC AAGGTTTTAA
AGGAAGAGGA ATTTGTAGAC ATCGTGGTGA TGTAGTTAAT TTAACAATTA
AAGATACTGG TAAAACTTCA CCAATAGATG GTAGTGTTAT TTATTCTGTT
AATTTAGATC AACCATTAAG AAGTGTCGCC TCNGGTCAAA TACTTTGTCT
TTTGATAGAA ATACTGATAG ATGTTTTGGT GGTGGTGAAT AACTCTTCTC
CATAANATCC AACCCAATT

Translated Amino Acid Sequence Contig-U09697-1

<All Frames> 
emkhtlv**iivkp**ti*ie*rkliihf*mlin*diqpq*ylqif*kmiiiilmilnrf
*rvqk*ecqhqlyyyqrnlkfvlvclva*iqqllqny*NYRVLMLLGVFIKSWDEVEDTG
RCQGERDWKDALEASNFLDIPMYKADFVKDYWNRVFVDFLKDYKNGLTPNPDVWCNREIK
FDLFFDFAKENFGVDYIATGXX---

---XXXFFLCMTKGERLKQAIFPIGGFTKENIVSFAKTIPNFSKITSKKSSRGICFIGKR
PLPDFLSQYMTLKPGDFFDISTNSFIKGKKHKGSVCYTMGQKANIDSLSERYFIVRSDIE
RNIVYVCPESQFDQFSLYYEFNTHSFNWINEIPTEVKSEQGFKGRGICRHRGDVVNLTIK
DTGKTSPIDGSVIYSVNLDQPLRSVASGQILCLLIEILIDVLVVVNNSSP*xptq


Homology Contig-U09697-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U09697-1 (Contig-U09697-1Q) /CSM_Contig/Conti...  1314  0.0
Contig-U14474-1 (Contig-U14474-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12377-1 (Contig-U12377-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U00705-1 (Contig-U00705-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13397-1 (Contig-U13397-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13228-1 (Contig-U13228-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12272-1 (Contig-U12272-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U12057-1 (Contig-U12057-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13204-1 (Contig-U13204-1Q) /CSM_Contig/Conti...    30  5.8


Homology Contig-U09697-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ415216) Dictyostelium discoideum cDNA clone:ddv21g24, 5' ...  1185   0.0    1
(BJ433428) Dictyostelium discoideum cDNA clone:ddv21g24, 3' ...  1098   0.0    2
(EK317527) 1095462418445 Global-Ocean-Sampling_GS-31-01-01-1...    54   3e-07  2
(EJ921914) 1093018648734 Global-Ocean-Sampling_GS-30-02-01-1...    54   4e-06  2
(EJ837114) 1093017670518 Global-Ocean-Sampling_GS-30-02-01-1...    54   4e-06  2
(EJ294752) 1095388026389 Global-Ocean-Sampling_GS-27-01-01-1...    40   8e-06  4
(EK259837) 1095462113882 Global-Ocean-Sampling_GS-31-01-01-1...    56   2e-05  3
(EJ764713) 1092963183379 Global-Ocean-Sampling_GS-30-02-01-1...    56   2e-05  3
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    38   3e-05  25
(EJ777679) 1093010713989 Global-Ocean-Sampling_GS-30-02-01-1...    56   3e-05  3


Homology Contig-U09697-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


(Q54I63) RecName: Full=Mitochondrial tRNA-specific 2-thiouridyla...   416   e-117
(Q9W5B6) RecName: Full=Mitochondrial tRNA-specific 2-thiouridyla...   115   4e-51
AL109630_14(AL109630|pid:none) Drosophila melanogaster BAC clone...   115   4e-51
(A5ITE6) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...   112   9e-47
(A7X333) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...   112   9e-47
(B5ZBP8) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...    97   1e-46
(Q6G8U8) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...   112   2e-46
(A8MEV9) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...   105   2e-46
(Q98Q11) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...   104   3e-46
(Q03EZ6) RecName: Full=tRNA-specific 2-thiouridylase mnmA;      ...   108   3e-45


<Clone: Contig-U09697-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home