Homology Contig-U09625-1 vs DNA
Query= Contig-U09625-1 (Contig-U09625-1Q) /CSM_Contig/Contig-U09625-1Q.Seq.d
(1204 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ432299) Dictyostelium discoideum cDNA clone:ddv18d12, 3' ... 906 0.0 1
(AU263906) Dictyostelium discoideum vegetative cDNA clone:VS... 726 0.0 2
(AU263907) Dictyostelium discoideum vegetative cDNA clone:VS... 862 0.0 2
(BJ413118) Dictyostelium discoideum cDNA clone:ddv14b07, 5' ... 359 e-174 3
(BJ431458) Dictyostelium discoideum cDNA clone:ddv14b07, 3' ... 575 e-171 2
(BJ414168) Dictyostelium discoideum cDNA clone:ddv18d12, 5' ... 345 e-150 3
(GR585516) CCAA610.b1 CCAA Dictyostelium purpureum 0 hr star... 371 4e-98 1
(GR585518) CCAA611.g1 CCAA Dictyostelium purpureum 0 hr star... 90 9e-56 4
(GR585517) CCAA610.g1 CCAA Dictyostelium purpureum 0 hr star... 90 2e-55 4
(AP010784) Solanum lycopersicum DNA, chromosome 8, clone: C0... 42 0.035 2
(AP009483) Solanum lycopersicum DNA, chromosome 8, clone: C0... 42 0.035 2
(BJ326166) Dictyostelium discoideum cDNA clone:dda15d16, 5' ... 44 0.042 2
(BJ362625) Dictyostelium discoideum cDNA clone:ddc22a23, 5' ... 44 0.048 2
(EJ079022) 1095458145782 Global-Ocean-Sampling_GS-26-01-01-1... 50 0.21 1
(EJ039987) 1095454086251 Global-Ocean-Sampling_GS-26-01-01-1... 50 0.21 1
(EJ081308) 1095460036511 Global-Ocean-Sampling_GS-26-01-01-1... 44 0.28 2
(BJ387640) Dictyostelium discoideum cDNA clone:dds3o20, 5' e... 40 0.76 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 42 0.77 15
(AC105484) Rattus norvegicus clone CH230-57H3, *** SEQUENCIN... 48 0.83 1
(AC098211) Rattus norvegicus clone CH230-208L16, WORKING DRA... 48 0.83 1
(CI023706) Oryza sativa Japonica Group cDNA, clone: 008-M002... 48 0.83 1
(CP001230) Persephonella marina EX-H1, complete genome. 48 0.83 1
(CJ490670) Macaca fascicularis mRNA, clone: QtsA-18471, 5' e... 38 0.88 2
(AM446297) Vitis vinifera contig VV78X023653.6, whole genome... 40 1.1 4
(BJ388743) Dictyostelium discoideum cDNA clone:dds16g03, 5' ... 38 1.6 2
(BJ326143) Dictyostelium discoideum cDNA clone:dda15m07, 5' ... 38 1.8 2
(AP002889) Homo sapiens genomic DNA, chromosome 11q, clone:R... 44 2.1 4
(FD701790) CAAA11008.fwd CAAA Petromyzon marinus Petromyzon ... 40 2.1 3
(CI283369) Oryza sativa Japonica Group cDNA, clone: 083-M157... 38 2.2 2
(ER402226) 1095351023921 Global-Ocean-Sampling_GS-34-01-01-1... 42 2.2 2
(AC094679) Rattus norvegicus clone CH230-5G10, *** SEQUENCIN... 44 2.2 5
(BJ325720) Dictyostelium discoideum cDNA clone:dda1m01, 5' e... 38 2.3 2
(CI281932) Oryza sativa Japonica Group cDNA, clone: 083-M134... 38 2.3 2
(AC213211) Homo sapiens chromosome 17 clone WI2-2353O2, *** ... 44 2.4 2
(AF250390) Carsonella ruddii elongation factor Tu (tufA) gen... 36 2.4 3
(CR762496) Zebrafish DNA sequence from clone DKEY-212J2 in l... 38 2.4 5
(BJ387721) Dictyostelium discoideum cDNA clone:dds4p10, 5' e... 40 2.4 2
(BJ326425) Dictyostelium discoideum cDNA clone:dda16n09, 5' ... 38 2.5 2
(BJ335134) Dictyostelium discoideum cDNA clone:dda49f05, 5' ... 40 2.7 2
(EC824156) SME00007986 esmbsro2 Sawyeria marylandensis cDNA,... 36 2.9 2
(EJ673244) 1092955066914 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.1 2
(EK264653) 1095462208108 Global-Ocean-Sampling_GS-31-01-01-1... 44 3.1 2
(EJ709970) 1092956071378 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.2 2
(CJ458972) Macaca fascicularis mRNA, clone: QmoA-11080, 5' e... 40 3.2 2
(EJ772463) 1092973701501 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.3 2
(EJ410511) 1093012139459 Global-Ocean-Sampling_GS-28-01-01-1... 40 3.3 2
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 46 3.3 1
(AC232557) Brassica rapa subsp. pekinensis clone KBrH029A20,... 46 3.3 1
(ER599278) 1093016235877 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.3 1
(ER322304) 1092344185944 Global-Ocean-Sampling_GS-34-01-01-1... 46 3.3 1
(EK042871) 1092959532301 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.3 1
(EK023716) 1092955349152 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.3 1
(EJ815762) 1093017514623 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.3 1
(EL570134) Physarum04669 Physarum polycephalum starvation st... 46 3.3 1
(EL567816) Physarum12839 Physarum polycephalum starvation st... 46 3.3 1
(EL566999) Physarum12840 Physarum polycephalum starvation st... 46 3.3 1
(EL498674) PFLAB1-M_F3_-P4A_F12_12.AB1 Blood stage Plasmodiu... 46 3.3 1
(EL493831) B11_PFBAMHI-MEDIUM-T7-PLATE1A.AB1 Blood stage Pla... 46 3.3 1
(EG377038) BG01012B2B10.f1 BG01 - normalized library Leymus ... 46 3.3 1
(EC758548) PPE00003937 Agencourt Biosciences Agen-0020 Non-n... 46 3.3 1
(CJ464223) Macaca fascicularis mRNA, clone: QnpA-12869, 5' e... 46 3.3 1
(BM275595) PfESToaa55b01.y1 Plasmodium falciparum 3D7 gameto... 46 3.3 1
(CJ450760) Macaca fascicularis mRNA, clone: QflA-16338, 5' e... 38 3.3 2
(EJ741387) 1092962021368 Global-Ocean-Sampling_GS-30-02-01-1... 44 3.3 2
(FG087310) CMRC-FF-IH0-acg-n-23-0-CMRC.r1 Ceratitis capitata... 36 3.4 2
(AM642391) Entamoeba dispar GSS, clone dispar93c11.q1k. 40 3.5 2
(AM627394) Entamoeba dispar GSS, clone dispar21g05.q1k. 40 3.7 2
(AZ865787) 2M0176L06F Mouse 10kb plasmid UUGC1M library Mus ... 34 4.0 3
(BJ389688) Dictyostelium discoideum cDNA clone:dds19o18, 5' ... 38 4.5 2
(BX908793) Zebrafish DNA sequence from clone DKEY-104G4 in l... 44 4.5 3
(BJ328764) Dictyostelium discoideum cDNA clone:dda29m09, 5' ... 34 4.6 2
(EK287511) 1095462317892 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.8 3
(AE015935) Staphylococcus epidermidis ATCC 12228 plasmid pSE... 36 6.0 3
(AC170279) Bos taurus clone CH240-259A11, WORKING DRAFT SEQU... 32 6.1 2
(BJ387346) Dictyostelium discoideum cDNA clone:dds1m23, 5' e... 36 6.6 2
(AX345487) Sequence 558 from Patent WO0200928. 34 6.8 4
(EK337538) 1095467048524 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.0 3
(BJ387869) Dictyostelium discoideum cDNA clone:dds5d18, 5' e... 34 7.8 2
(BJ413679) Dictyostelium discoideum cDNA clone:ddv16i16, 5' ... 36 7.9 2
(DY276385) IC0AAA41AA07RM1 CitNFL Citrus clementina cDNA 5',... 34 8.1 2
(ER478577) 1093015250937 Global-Ocean-Sampling_GS-35-01-01-1... 34 8.1 3
(EJ754182) 1092963061493 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.3 2
(EJ745224) 1092962053695 Global-Ocean-Sampling_GS-30-02-01-1... 32 8.3 2
(FM911662) Brachionus plicatilis EST 5' end, clone sb102P000... 32 8.4 2
(BJ327654) Dictyostelium discoideum cDNA clone:dda21d11, 5' ... 40 8.9 2
(CP000933) Campylobacter lari RM2100 megaplasmid pCL2100, co... 40 9.3 4
(AL590107) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 9.6 4
>(BJ432299) Dictyostelium discoideum cDNA clone:ddv18d12, 3' end,
single read.
Length = 591
Score = 906 bits (457), Expect = 0.0
Identities = 478/484 (98%)
Strand = Plus / Minus
Query: 604 aggtaattccagatatcgtcacaatggcaaaaggtatcaatggtgcctacctcccattgg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 aggtaattccagatatcgtcacaatggcaaaaggtatcaatggtgcctacctcccattgg 528
Query: 664 gtgctgttggctgtcgtgatcgtattgctgaccactttaaagtcaacccaattggcattg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtgctgttggctgtcgtgatcgtattgctgaccactttaaagtcaacccaattggcattg 468
Query: 724 gctcaacttacaatagtcatccagtcacattagcatcagcatatgccgcattacaatatt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gctcaacttacaatagtcatccagtcacattagcatcagcatatgccgcattacaatatt 408
Query: 784 tnttaaanaatcgtgtattggataatgttaaaactttagaaccagtaatgaaaaaacata 843
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 407 tnttaaanaatcgtgtattggataatgttaaaactttanaaccagtaatgaaaaaacata 348
Query: 844 tggaacaattgaaacaacgtcatccaacagtcaaaggttaccgttcattaggtttattcg 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggaacaattgaaacaacgtcatccaacagtcaaaggttaccgttcattaggtttattcg 288
Query: 904 gtatcgttgaacttcaaaagaattcaaatggtgacccattcatcgaanacaatggtccac 963
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 287 gnatcgttgaacttcaaaanaattcaaatggtgacccattcatcgaanacaatggtccnc 228
Query: 964 cacacccagccatgactaaactatcctcagatttcgttgaaaatggtttatacacacttt 1023
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 227 cacacccagccatgactaaactatcctcagatttcgttgaaaatggtttanacacacttt 168
Query: 1024 gccgttggtcatccttctttacaaatccaccattaacaattaatgaaaaagaattaaaag 1083
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 167 gccgttggtcatccttctttacaaatccnccattaacaattaatgaaaaagaattaaaag 108
Query: 1084 aagg 1087
||||
Sbjct: 107 aagg 104
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,300,825,659
Number of extensions: 80844934
Number of successful extensions: 7071204
Number of sequences better than 10.0: 93
Length of query: 1204
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1180
Effective length of database: 104,103,628,548
Effective search space: 122842281686640
Effective search space used: 122842281686640
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home