<Clone: Contig-U09602-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U09602-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U09602-1

< more Chromosomal info >

Chromosome Number 1
Length 4919822
Start Poin 512,398
End Point 513,434
Strand PLUS

Sequence Contig-U09602-1

ATTTTTAAAA TCAAAAATGA AAAACAGCTC ATCAATGTTA AAAGGAGTTA
AATTATTTAT TGGTAGTGGA ATTTATACAA ACAAACCAAT ATATGATGTA
GCAATTGTTG GTGGGGGTAT AGTTGGATTA GCAACAGGTA GAGAATTATT
AAAGAGGAAT CCAAAATTAA AAATTGTAAT ACTTGAAAAG GAGAATGAAA
TTGCACCACA TCAATCATCA CATAATAGTG GTGTAATTCA TTGTGGAATT
TATTATAAAC CAGGATCATT AAGAGCTAAA CTTTGTACAA AAGGTTCAAA
GTTAATGTAT GACTATTGTA ATGAAAATCA AATAAACTAT GAAAATTGTG
GTAAATTAAT TGTTGCAACC TAAAAAAGAA GAATTTNAAC AATTAGAACA
ACTCTATAAA AGAGGTATTG AAAATGGTGT ACCAAATATA AAACTNT---
-------GGT AGTTTTTTAC AATTTAAACC AGAATTTAGA CATTTGATTA
AAGGTAATGT TTATCCATTA CCAAATGCTT CATTCCCATT TTTAGGTGTT
CATTTCACAA AGAGGATTAA TGGTGAAGTT TGGTTAGGTC CAAATGCGGT
ATTATCATTC GACAGAGAGG GATACAAATT CACAGATTTC AATCTACACG
ATACTATTGA TTTAATTAAA AATCCTGGTT TATTTAAATT GGCCAAAAAA
CATTGGAAAT ATGGCTTAGG TGAATTGTAT AGAGATTTTA ATAAAGATCA
TTTCATTCAA CTTTTAAAAC CATATATGCC AAATATCNCC GTGGACATGT
TAGAATATGG AGGTAGTGGT GTTAGAAGTC AAGCAATTTC GAAATCTGGT
GATTTAATTG AAGATTTCAT TTTTGATACA CCATCAGATG TTCCAATAAT
ACATGTAAGA AATTCACCTT CTCCTGCTGC AACCTCTTCA CTTGCAATTG
CAATTGAAAT TGTAGATTTA GCTCAAAATA ATTTTAAAAA TTTAAATTCT
TTATAAAAAA AAAAAATAAA ATAAAATTTA ATAAAAGTAC ATTT

Translated Amino Acid Sequence Contig-U09602-1

<All Frames> 
f*nqk*ktahqc*kelnyllvvefiqtnqymm*qllvgv*ld*qqveny*rgiqn*kl*y
lkrrmklhhinhhiivv*fivefiinqdh*elnfvqkvqs*cmtivmkik*tmkivvn*L
LQPKKEEFXQLEQLYKRGIENGVPNIKL---

---GSFLQFKPEFRHLIKGNVYPLPNASFPFLGVHFTKRINGEVWLGPNAVLSFDREGYK
FTDFNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDFNKDHFIQLLKPYMPNIXVDMLEY
GGSGVRSQAISKSGDLIEDFIFDTPSDVPIIHVRNSPSPAATSSLAIAIEIVDLAQNNFK
NLNSL*kkkik*nlikvh


Homology Contig-U09602-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U09602-1 (Contig-U09602-1Q) /CSM_Contig/Conti...  1921  0.0
Contig-U11160-1 (Contig-U11160-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U13867-1 (Contig-U13867-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U12159-1 (Contig-U12159-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U10780-1 (Contig-U10780-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U11225-1 (Contig-U11225-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U11186-1 (Contig-U11186-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U10870-1 (Contig-U10870-1Q) /CSM_Contig/Conti...    36  0.074
Contig-U09764-1 (Contig-U09764-1Q) /CSM_Contig/Conti...    36  0.074


Homology Contig-U09602-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(BJ428354) Dictyostelium discoideum cDNA clone:ddv11k14, 3' ...  1015   0.0    1
(BJ410208) Dictyostelium discoideum cDNA clone:ddv11k14, 5' ...   876   0.0    1
(EE005563) ROE00014034 Rhizopus oryzae Company Rhizopus oryz...    44   2e-09  3
(EE006723) ROE00000906 Rhizopus oryzae Company Rhizopus oryz...    44   2e-09  3
(EE006665) ROE00003973 Rhizopus oryzae Company Rhizopus oryz...    44   3e-09  3
(CU222525) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    56   7e-09  5
(CQ719770) Sequence 5704 from Patent WO02068579.                   52   8e-09  2
(AY757363) Homo sapiens putative L-2-hydroxyglutarate dehydr...    52   9e-09  2
(AR578445) Sequence 621 from patent US 6783969.                    52   1e-08  2
(AK292627) Homo sapiens cDNA FLJ76725 complete cds, highly s...    52   1e-08  2


Homology Contig-U09602-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


BC158515_1(BC158515|pid:none) Xenopus tropicalis hypothetical pr...   177   7e-43
AK022680_1(AK022680|pid:none) Homo sapiens cDNA FLJ12618 fis, cl...   176   9e-43
(A7MBI3) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc...   175   3e-42
AK152450_1(AK152450|pid:none) Mus musculus bone marrow macrophag...   171   4e-41
AK145228_1(AK145228|pid:none) Mus musculus mammary gland RCB-052...   171   4e-41
BX927407_12(BX927407|pid:none) Zebrafish DNA sequence from clone...   171   5e-41
(A8X2R1) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc...   170   9e-41
(Q9N4Z0) RecName: Full=L-2-hydroxyglutarate dehydrogenase, mitoc...   168   2e-40
AK168429_1(AK168429|pid:none) Mus musculus 17 days pregnant adul...   168   2e-40
FN357418_35(FN357418|pid:none) Schistosoma mansoni genome sequen...   164   6e-39


<Clone: Contig-U09602-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home