Homology Contig-U09597-1 vs DNA
Query= Contig-U09597-1 (Contig-U09597-1Q) /CSM_Contig/Contig-U09597-1Q.Seq.d
(1093 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ427916) Dictyostelium discoideum cDNA clone:ddv10d05, 3' ... 965 0.0 2
(BJ409792) Dictyostelium discoideum cDNA clone:ddv10d05, 5' ... 741 0.0 3
(AC207211) Pongo abelii chromosome UNKNOWN clone CH276-404G1... 38 0.016 8
(CU019613) Mouse DNA sequence from clone bMQ-_389E17 on chro... 52 0.048 1
(AC126598) Mus musculus chromosome 5, clone RP24-486L9, comp... 52 0.048 1
(U02300) Pennisetum glaucum activator (Ac)-like element Pac1... 52 0.048 1
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 0.11 17
(EK581626) 1095521702434 Global-Ocean-Sampling_GS-32-01-01-1... 40 0.12 3
(CU682361) Zebrafish DNA sequence from clone CH1073-475E17. 40 0.16 3
(U64599) Caenorhabditis elegans cosmid F56B6, complete seque... 36 0.19 5
(AW650088) EST328542 tomato germinating seedlings, TAMU Sola... 50 0.19 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 0.19 19
(AC193480) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 42 0.26 4
(CU928921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.36 4
(BX321879) Zebrafish DNA sequence from clone CH211-147M4 in ... 36 0.46 5
(AC189493) Brassica rapa subsp. pekinensis clone KBrB084P16,... 40 0.52 6
(CP000609) Methanococcus maripaludis C5, complete genome. 34 0.59 19
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 0.61 12
(DB684495) Solanum lycopersicum cDNA, clone: LEFL1020AB07, 5... 46 0.63 2
(AK321138) Solanum lycopersicum cDNA, clone: LEFL1020AB07, H... 46 0.64 2
(AB231328) Plasmodium berghei lsp2 gene for liver stage prot... 38 0.68 5
(CT020697) KBrH131E19 genomic clone, KBrH (HindIII) BAC libr... 48 0.75 1
(BZ022730) oeh04g10.g1 B.oleracea002 Brassica oleracea genom... 48 0.75 1
(EV197988) 0099141 Brassica napus Cold acclimation - light B... 48 0.75 1
(CP001147) Thermodesulfovibrio yellowstonii DSM 11347, compl... 48 0.75 1
(EJ719565) 1092959442710 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.85 2
(EJ648532) 1092953002475 Global-Ocean-Sampling_GS-30-02-01-1... 44 0.87 2
(FI856840) ICCM0172_T7 Microsatellite enriched genomic DNA l... 32 0.90 3
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 1.0 16
(AC200398) Spermophilus tridecemlineatus clone VMRC20-480D24... 36 1.1 9
(AC170599) Mus musculus BAC clone RP23-369P2 from chromosome... 34 1.1 7
(BJ407955) Dictyostelium discoideum cDNA clone:dds44o02, 3' ... 36 1.1 3
(AC222420) Bos taurus clone CH240-417M9, WORKING DRAFT SEQUE... 36 1.4 6
(CU861935) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.5 7
(S96842) SP96=spore-coat protein {5' region} [Dictyostelium ... 32 1.5 4
(AC093767) Homo sapiens BAC clone RP11-107E21 from 4, comple... 38 1.6 8
(AL929084) Mouse DNA sequence from clone RP23-66M24 on chrom... 36 1.8 6
(AL731876) Oryza sativa chromosome 12, . BAC OJ1194_E11 of l... 42 2.0 4
(BX569688) Oryza sativa chromosome 12, ***SEQUENCING IN PROG... 42 2.0 4
(BB970378) Plasmodium berghei str. ANKA cDNA clone: OK000001... 34 2.1 2
(BU267854) 603815342F1 CSEQCHN52 Gallus gallus cDNA clone Ch... 42 2.4 2
(EJ137508) 1092343614744 Global-Ocean-Sampling_GS-27-01-01-1... 44 2.5 2
(EY361732) CAWZ7881.fwd CAWZ Helobdella robusta Primary Late... 44 2.7 2
(EK267719) 1095462240306 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.7 2
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg... 36 2.8 19
(FP243388) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 2.8 7
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg... 36 2.9 19
(EK137006) 1095439026655 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.0 2
(EK140703) 1095454102554 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.0 2
(AC122888) Mus musculus BAC clone RP23-93F11 from chromosome... 46 3.0 1
(AC102934) Mus musculus chromosome 3, clone RP24-209C11, com... 46 3.0 1
(EF487807) Aphodius chopardi 16S ribosomal RNA gene, partial... 46 3.0 1
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ... 46 3.0 1
(AC160457) Mus musculus chromosome 3 clone RP23-352D18 map 3... 46 3.0 1
(AC128011) Rattus norvegicus clone CH230-409H6, WORKING DRAF... 46 3.0 1
(AC110685) Rattus norvegicus clone CH230-203O8, *** SEQUENCI... 46 3.0 1
(AC108898) Felis catus clone RP86-212B12, WORKING DRAFT SEQU... 46 3.0 1
(AC108247) Rattus norvegicus clone CH230-226I3, *** SEQUENCI... 46 3.0 1
(AC107322) Felis catus clone RP86-198D15, WORKING DRAFT SEQU... 46 3.0 1
(AC095316) Rattus norvegicus clone CH230-33J13, *** SEQUENCI... 46 3.0 1
(AC094413) Rattus norvegicus clone CH230-3N4, *** SEQUENCING... 46 3.0 1
(AC235876) Glycine max strain Williams 82 clone GM_WBb0145H1... 46 3.0 1
(AC211072) Solanum lycopersicum chromosome 6 clone C06HBa030... 46 3.0 1
(AK224753) Solanum lycopersicum cDNA, clone: FC12DC06, HTC i... 46 3.0 1
(AL444827) Fugu rubripes GSS sequence, clone 263K15aF9. 46 3.0 1
(DE971354) Macropus eugenii DNA, BAC clone: MEB1-176I20_F, 5... 46 3.0 1
(CR124534) Forward strand read from insert in 3'HPRT inserti... 46 3.0 1
(EL510929) CFFZ538.b1_D15.ab1 CFF(XYZ) safflower Carthamus t... 46 3.0 1
(DB704730) Solanum lycopersicum cDNA, clone: LEFL1086BF08, 5... 46 3.0 1
(DB702246) Solanum lycopersicum cDNA, clone: LEFL1076AF01, 5... 46 3.0 1
(CN576663) rf31a03.x1 Meloidogyne hapla J2 pAMP1 v1 Meloidog... 46 3.0 1
(CD002224) EST0231 Normalized cDNA library from ripening tom... 46 3.0 1
(BW691827) Solanum lycopersicum cDNA, clone: FC23CD07, 5' en... 46 3.0 1
(BW688669) Solanum lycopersicum cDNA, clone: FC12DC06, 5' en... 46 3.0 1
(BI816119) PfESToaa36f01.y1 Plasmodium falciparum 3D7 asexua... 46 3.0 1
(BI422501) EST533167 tomato callus, TAMU Solanum lycopersicu... 46 3.0 1
(BG126662) EST472308 tomato shoot/meristem Solanum lycopersi... 46 3.0 1
(GO649445) EST_afim_evh_1050464 afimevh mixed_tissue Anoplop... 46 3.0 1
(GO648725) EST_afim_evh_1048157 afimevh mixed_tissue Anoplop... 46 3.0 1
(GO648724) EST_afim_evh_1056989 afimevh mixed_tissue Anoplop... 46 3.0 1
(GO634134) EST_afim_evh_919804 afimevh mixed_tissue Anoplopo... 46 3.0 1
(AL929064) Mouse DNA sequence from clone RP23-442A7 on chrom... 42 3.4 6
(AL845363) Zebrafish DNA sequence from clone CH211-14G12 in ... 34 3.4 6
(CC266295) CH261-12K13_RM1.1 CH261 Gallus gallus genomic clo... 42 3.7 2
(AC012958) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 40 3.8 3
(AC101795) Mus musculus chromosome 5, clone RP24-201P24, com... 44 4.1 6
(CU464127) Zebrafish DNA sequence from clone DKEY-165K19 in ... 36 4.1 4
(CR391909) Zebrafish DNA sequence from clone DKEY-201N22 in ... 36 4.2 5
(AC025722) Caenorhabditis elegans cosmid Y50D4C, complete se... 32 4.2 6
(AC102398) Mus musculus chromosome 8, clone RP24-213P1, comp... 38 4.2 6
(AC235410) Glycine max strain Williams 82 clone GM_WBb0128C2... 32 4.8 8
(EJ282668) 1095366064669 Global-Ocean-Sampling_GS-27-01-01-1... 34 4.9 3
(DV749849) ID0AAH2DA04ZM1 ID0AAH Acyrthosiphon pisum cDNA cl... 34 5.4 3
(BX322624) Zebrafish DNA sequence from clone DKEY-273E21 in ... 32 5.7 2
(AX253277) Sequence 1 from Patent WO0170990. 30 6.0 4
(BX004768) Zebrafish DNA sequence from clone CH211-15L16. 36 6.2 5
(AM478229) Vitis vinifera contig VV78X137537.6, whole genome... 34 6.3 2
(DE627600) Bombyx mori genomic DNA, Fosmid clone:GBMFno370_b... 32 6.4 3
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 34 6.4 19
(Z36948) Caenorhabditis elegans Cosmid D2089. 38 6.6 3
(AC173417) Bos taurus clone CH240-278B13, WORKING DRAFT SEQU... 36 6.7 8
(AL096775) Human DNA sequence from clone RP3-336M4 on chromo... 44 6.9 4
(CP001146) Dictyoglomus thermophilum H-6-12, complete genome. 38 7.2 20
(EK184146) 1095458136694 Global-Ocean-Sampling_GS-31-01-01-1... 32 7.5 2
(EJ123572) 1092343384425 Global-Ocean-Sampling_GS-27-01-01-1... 32 7.5 2
(GC770060) Sequence 85305 from patent US 6812339. 42 7.6 2
(DE554911) Bombyx mori genomic DNA, Fosmid clone:GBMFno192_j... 32 7.7 3
(CU855879) Zebrafish DNA sequence from clone CH73-159H2 in l... 38 7.8 7
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 7.8 15
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 34 7.8 15
(CS594210) Sequence 543 from Patent WO2007039319. 38 8.4 2
(CS532444) Sequence 543 from Patent EP1770171. 38 8.4 2
(AC023458) Homo sapiens chromosome 2 clone RP11-456I21 map 2... 36 8.5 5
(AC155602) Zea mays strain B73 clone ZMMBBc0232P14, *** SEQU... 38 8.5 5
(AC163341) Mus musculus BAC clone RP24-138G13 from chromosom... 34 8.7 7
(EE135210) SiJWF02ACZ Lausanne fire ant library Solenopsis i... 32 8.9 3
(AY689437) Deerpox virus W-1170-84, complete genome. 34 9.5 9
(BX247887) Zebrafish DNA sequence from clone CH211-142L10. 36 9.6 5
(AL713987) Zebrafish DNA sequence from clone BUSM1-145B16 in... 38 9.8 7
(AP010009) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 9.8 6
(GR537947) CCIA9608.b1 CCIA Mucor circinelloides from light ... 36 9.9 2
>(BJ427916) Dictyostelium discoideum cDNA clone:ddv10d05, 3' end,
single read.
Length = 573
Score = 965 bits (487), Expect(2) = 0.0
Identities = 490/490 (100%)
Strand = Plus / Minus
Query: 522 tcaaagtatgataatttcccactttatctagttaatnatggtgttcttgacatgagatta 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcaaagtatgataatttcccactttatctagttaatnatggtgttcttgacatgagatta 514
Query: 582 cctccatatgaaattgatcatcctgcagaaaatcttggctttgccgtatatgattttatc 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cctccatatgaaattgatcatcctgcagaaaatcttggctttgccgtatatgattttatc 454
Query: 642 aatgatggtgtattatggttaaatttttcattgttattagactttggatacaaagtttca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aatgatggtgtattatggttaaatttttcattgttattagactttggatacaaagtttca 394
Query: 702 agaccaacacgttcatttaaaaaagttacaatggaaattagaataaatgattacgaaaat 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaccaacacgttcatttaaaaaagttacaatggaaattagaataaatgattacgaaaat 334
Query: 762 cctaatgattttagtgttactgttgactcaactacaaaagcaagcaaagatatggaaaaa 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cctaatgattttagtgttactgttgactcaactacaaaagcaagcaaagatatggaaaaa 274
Query: 822 ttaacttttagatcttttgcccagtacagactttttgtcgaacaagattttggtagggtt 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttaacttttagatcttttgcccagtacagactttttgtcgaacaagattttggtagggtt 214
Query: 882 tacaaatgcacatttgatttttcacaagagaaaacaagttttgatgtaagtttccaatca 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tacaaatgcacatttgatttttcacaagagaaaacaagttttgatgtaagtttccaatca 154
Query: 942 cttgaaccatatatgaatcaacttaattgtgttcactatagattagaatagaaaatgaaa 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 cttgaaccatatatgaatcaacttaattgtgttcactatagattagaatagaaaatgaaa 94
Query: 1002 aaatttccaa 1011
||||||||||
Sbjct: 93 aaatttccaa 84
Score = 77.8 bits (39), Expect(2) = 0.0
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 1052 taaaattcaattacaccaccaccaccactnccactgtcacca 1093
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 taaaattcaattacaccaccaccaccactnccactgtcacca 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,527,623,877
Number of extensions: 105775305
Number of successful extensions: 10182473
Number of sequences better than 10.0: 126
Length of query: 1093
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1069
Effective length of database: 104,103,628,548
Effective search space: 111286778917812
Effective search space used: 111286778917812
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home