Dictyostelium discoideum cDNA Contig-U09580-1

Assembled

Chromosomal Location of Contig-U09580-1

Sequence Contig-U09580-1

CACTGTTGGC CTACTGGAAA ATTATTATTG ATAGAGTAAT AAAAATAAAA
AAAATGAAAT ATTTAAATAT ACTTTTAATA TTTTTTATTG TAATTATTGG
TTGTGTTGTT AGTTTAAAAT CACCAATTAA ATCTAAAATT GATGTACCAA
GATTAAATAA TCAACAAGTT AGATATCCAT CAGATGAAAC TTGGTCAGAA
GTTGATACAT TTTTAGAAGA AGCAATTGAA AATGGTACTT TTCCAGGTTG
TGTTGCTTTA GTTGGTAATC AAAAAGGTGT CTTATATGCC TCTGCAAAAG
GTAGTTTCAC TTATGGTATT GGTACTCCAA TTAATGATTT TAAAGTACCA
CCAATGGAAT TAAGTACATT ATTTGATATG GCAAGTTGCT CAAAAGTTAC
AGCATGTACA ACATCAGTAG CACAATTTTA TCAAAGAGGT GAACTTAATT
TAGATTCACC AATTACAGAT TTTTTAGGAT TAGAATTTGG AGTTAATGGA
AAGAGTGGAA TTTCAGTTAG AAATTGTTTA TTACATAATT CAGGATTTTA
TCCAGACCCA AATCCATTTT GGAATACAGC AGAATTTAAT TGTCCAG---
-------AAC TTATGTATAT AGTGATTTAA ATTTCATGAC ATTAATGTAT
GTAGTTGGTA ATTTAGCTAA ACAGTTTAAT TACATCACTG CGGATCAGTT
AACACCAGGT TGTGATAATG GTGCACCTGA AAATGCTCAA TGCTACTACG
AAGCATACGT AAGACACTAT GTTTTCAATG CATTGAATTT AAATGTCACA
AATTATTTAC CACCACAATA TTTAGCTCCA CAATGTGCAC CAACTGAAAA
TGATACAGTT TATATGCATA CCACAATTCA AGGTGTTGTT TCTGATGGTA
ATGCTTATGC ATTAGGTGGT ATCAGTGGTC ATGCTGGTGT ATTCTCAAAT
GTTGAAGAAA TGTGGATTTT CATGTACTCT TTAATGTTTG CTGAAGCAAA
TTCTCAATAT CTTAATAGTA CAACTGTACA ATATTTTACA ACTGAATATA
ATCATACTCA AAGTTCAAGA GCATTAGGTT GGAATACAAA TGATCCATCT
GTTTTTGATG AAGGCTGGGG ATTGGCTTGT GGAACATTAT CAGCAAAGAC
ATGGATGCAT TTAGGTTATA CCGGCACTAT GTTATGTGGT GATCCTGAAC
GTGAACTCAT TGTTATTTTA TTAACAAATA GAGTATATCC AGACCCTTCA
AATATTAAAA TTGAAAATGT TAGAAAACCT TTCTCAACAT TGGTTCAACA
AGTTTAGATT CAATTATAAA TTAAATAAAT ATATA

Translated Amino Acid Sequence Contig-U09580-1

LLAYWKIIIDRVIKIKKMKYLNILLIFFIVIIGCVVSLKSPIKSKIDVPRLNNQQVRYPS
DETWSEVDTFLEEAIENGTFPGCVALVGNQKGVLYASAKGSFTYGIGTPINDFKVPPMEL
STLFDMASCSKVTACTTSVAQFYQRGELNLDSPITDFLGLEFGVNGKSGISVRNCLLHNS
GFYPDPNPFWNTAEFNCP---

---TYVYSDLNFMTLMYVVGNLAKQFNYITADQLTPGCDNGAPENAQCYYEAYVRHYVFN
ALNLNVTNYLPPQYLAPQCAPTENDTVYMHTTIQGVVSDGNAYALGGISGHAGVFSNVEE
MWIFMYSLMFAEANSQYLNSTTVQYFTTEYNHTQSSRALGWNTNDPSVFDEGWGLACGTL
SAKTWMHLGYTGTMLCGDPERELIVILLTNRVYPDPSNIKIENVRKPFSTLVQQV*iql*
ik*iy

Homology Contig-U09580-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09580-1 (Contig-U09580-1Q) /CSM_Contig/Conti...  2480  0.0
Contig-U01095-1 (Contig-U01095-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14741-1 (Contig-U14741-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14713-1 (Contig-U14713-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13893-1 (Contig-U13893-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13706-1 (Contig-U13706-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12653-1 (Contig-U12653-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10778-1 (Contig-U10778-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12287-1 (Contig-U12287-1Q) /CSM_Contig/Conti...    36  0.095

Homology Contig-U09580-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ435969) Dictyostelium discoideum cDNA clone:ddv29n03, 3' ...  1253   0.0    1
(BJ430406) Dictyostelium discoideum cDNA clone:ddv7l02, 3' e...  1247   0.0    3
(BJ416153) Dictyostelium discoideum cDNA clone:ddv25j06, 5' ...  1029   0.0    2
(BJ434839) Dictyostelium discoideum cDNA clone:ddv25j06, 3' ...  1043   0.0    2
(BJ412154) Dictyostelium discoideum cDNA clone:ddv7l02, 5' e...  1063   0.0    1
(BJ416280) Dictyostelium discoideum cDNA clone:ddv25j17, 5' ...   307   1e-93  2
(FE245184) CAPG8685.fwd CAPG Naegleria gruberi amoeba stage ...    52   0.001  3
(EI383256) POTBP05TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   0.005  2
(BJ415511) Dictyostelium discoideum cDNA clone:ddv22g19, 5' ...    40   0.009  3
(BJ337066) Dictyostelium discoideum cDNA clone:dda56j05, 5' ...    46   0.016  2

Homology Contig-U09580-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC116305_118(AC116305|pid:none) Dictyostelium discoideum chromos...   818   0.0
CP001099_1674(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,...   156   2e-36
CP001101_1802(CP001101|pid:none) Chlorobium phaeobacteroides BS1...   155   3e-36
CP001097_1673(CP001097|pid:none) Chlorobium limicola DSM 245, co...   152   3e-35
CP001132_1789(CP001132|pid:none) Acidithiobacillus ferrooxidans ...   149   2e-34
CP001472_149(CP001472|pid:none) Acidobacterium capsulatum ATCC 5...   146   2e-33
CP000108_471(CP000108|pid:none) Chlorobium chlorochromatii CaD3,...   141   5e-32
CP000383_13(CP000383|pid:none) Cytophaga hutchinsonii ATCC 33406...   137   1e-30
CP000473_3587(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   136   1e-30
CP000557_1271(CP000557|pid:none) Geobacillus thermodenitrificans...   132   4e-29