Dictyostelium discoideum cDNA Contig-U09531-1

Assembled

Chromosomal Location of Contig-U09531-1

Sequence Contig-U09531-1

CAAAAACAAA ACTTATTAAT AATAATATAT ATACAATAAA AAAATGAACG
ATCATGACGA TTTTCCACCT TTAGGTTCAA AACCAGTAAA GAGGACAAAT
AATAACAATA ATAATAATAA TAATAATAGT AATGGATTTT CATATAGACA
AACAACAACA ACAACACAAA CTGCAGTTCA ACCAATTTTA GTACCAACAA
TAATAAAGGA GTCAACTAAA AATGAAATTA TTGATATTGG TGCAAATTTA
GCTGATAAAT CATTTGAAAG AGATATTGAT CAAATTTTAG AAAGAGGTTA
TAATAAAGGT GTTACAAAAA TTATAATTAC AGGTACATCA GTTAAATCAT
CAATTAAAGC AATACAATTA ATTGAGAGTA ATAAGAGAAA GAAAGGATTA
GTTGAACTAT TTTCAACGGT TGGAGTTCAT CCACATTCAG CAGAGGAAAC
ATTGAAAATG AATGGTGGTA GTGGTGAGAA AGCACAAGAT GAGTTGAGAC
AATTGATAAA GAGTAATTTA AATGTTGTTA AATCAGTTGG TGAATGTGGT
TTGGATTTCA ATCGTAATTT CAGCTCACAT GCAACTCAAA TCGAAATGTT
TGATAGACAA ATCCAATTAG GAATAGAGTT TAAATTACCA TTATTCATTC
ACGAGAGAGA TGCACATAAA CAATTTTGCA CTGTCGTTGA AAA-------
---GCAANAA TGTATGTTTC AATGGGATTN TANATTGGTT TCNCTGGNGT
GATTGGTCAT GATAAAANAG GTGAACAATT AANAGCAATN TTAAAATCTG
GNATCATCCC NTTGGATCGT TTAATGATTG AAAC

Translated Amino Acid Sequence Contig-U09531-1

knkty***YIYNKKMNDHDDFPPLGSKPVKRTNNNNNNNNNNSNGFSYRQTTTTTQTAVQ
PILVPTIIKESTKNEIIDIGANLADKSFERDIDQILERGYNKGVTKIIITGTSVKSSIKA
IQLIESNKRKKGLVELFSTVGVHPHSAEETLKMNGGSGEKAQDELRQLIKSNLNVVKSVG
ECGLDFNRNFSSHATQIEMFDRQIQLGIEFKLPLFIHERDAHKQFCTVVE---

---AXMYVSMGXXIGFXGVIGHDKXGEQLXAXLKSGIIPLDRLMIE

Homology Contig-U09531-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09531-1 (Contig-U09531-1Q) /CSM_Contig/Conti...  1199  0.0
Contig-U07296-1 (Contig-U07296-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U13938-1 (Contig-U13938-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U12826-1 (Contig-U12826-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U05389-1 (Contig-U05389-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U04364-1 (Contig-U04364-1Q) /CSM_Contig/Conti...    36  0.059
Contig-U14772-1 (Contig-U14772-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U14514-1 (Contig-U14514-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U14340-1 (Contig-U14340-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U13633-1 (Contig-U13633-1Q) /CSM_Contig/Conti...    34  0.23

Homology Contig-U09531-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ413814) Dictyostelium discoideum cDNA clone:ddv17f01, 5' ...  1035   0.0    3
(BJ417458) Dictyostelium discoideum cDNA clone:ddv30n14, 5' ...   866   0.0    3
(BJ410844) Dictyostelium discoideum cDNA clone:ddv2g05, 5' e...   864   0.0    3
(BJ429016) Dictyostelium discoideum cDNA clone:ddv2g05, 3' e...   198   3e-46  1
(AA842860) SWAMCAC09C12SK Brugia malayi adult male cDNA (SAW...    42   4e-04  2
(AC008500) Homo sapiens chromosome 5 clone CTC-439D5, comple...    34   1.2    2
(AC021564) Homo sapiens clone RP11-772J6, WORKING DRAFT SEQU...    34   1.2    2
(AC020919) Homo sapiens chromosome 5 clone CTD-2031A20, WORK...    34   1.2    2
(AC012605) Homo sapiens chromosome 5 clone CTC-481A8, WORKIN...    34   1.2    2
(AG701992) Macaca fuscata fuscata DNA, clone: MSB2-141O19_R,...    36   1.5    2

Homology Contig-U09531-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BT078001_1(BT078001|pid:none) Lepeophtheirus salmonis clone lsal...   139   1e-31
AP008955_976(AP008955|pid:none) Brevibacillus brevis NBRC 100599...   130   7e-29
AM181176_1648(AM181176|pid:none) Pseudomonas fluorescens SBW25 c...   124   4e-27
AE016853_2215(AE016853|pid:none) Pseudomonas syringae pv. tomato...   121   2e-26
CP000075_2059(CP000075|pid:none) Pseudomonas syringae pv. syring...   120   7e-26
CP000544_171(CP000544|pid:none) Halorhodospira halophila SL1, co...   119   1e-25
CP000685_4702(CP000685|pid:none) Flavobacterium johnsoniae UW101...   118   3e-25
CP000058_1940(CP000058|pid:none) Pseudomonas syringae pv. phaseo...   117   5e-25
CP000821_4094(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...   115   2e-24
CP000102_942(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...   114   4e-24