Homology Contig-U09531-1 vs DNA
Query= Contig-U09531-1 (Contig-U09531-1Q) /CSM_Contig/Contig-U09531-1Q.Seq.d
(834 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ413814) Dictyostelium discoideum cDNA clone:ddv17f01, 5' ... 1035 0.0 3
(BJ417458) Dictyostelium discoideum cDNA clone:ddv30n14, 5' ... 866 0.0 3
(BJ410844) Dictyostelium discoideum cDNA clone:ddv2g05, 5' e... 864 0.0 3
(BJ429016) Dictyostelium discoideum cDNA clone:ddv2g05, 3' e... 198 3e-46 1
(AA842860) SWAMCAC09C12SK Brugia malayi adult male cDNA (SAW... 42 4e-04 2
(AC008500) Homo sapiens chromosome 5 clone CTC-439D5, comple... 34 1.2 2
(AC021564) Homo sapiens clone RP11-772J6, WORKING DRAFT SEQU... 34 1.2 2
(AC020919) Homo sapiens chromosome 5 clone CTD-2031A20, WORK... 34 1.2 2
(AC012605) Homo sapiens chromosome 5 clone CTC-481A8, WORKIN... 34 1.2 2
(AG701992) Macaca fuscata fuscata DNA, clone: MSB2-141O19_R,... 36 1.5 2
(DU964599) 234536 Tomato MboI BAC Library Solanum lycopersic... 36 1.5 2
(FH645014) CHO_OF4984xh20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 1.6 2
(EJ221677) 1092351242220 Global-Ocean-Sampling_GS-27-01-01-1... 38 1.6 2
(ET725655) CHO_OF139xa05f1.ab1 CHO_OF Nicotiana tabacum geno... 42 1.6 2
(AC177785) Strongylocentrotus purpuratus clone R3-1002H10, W... 36 2.1 5
(AC230832) Bos taurus clone CH240-498A2, WORKING DRAFT SEQUE... 46 2.3 1
(AC221668) Bos taurus clone CH240-389I20, WORKING DRAFT SEQU... 46 2.3 1
(AC221644) Bos taurus clone CH240-389N10, WORKING DRAFT SEQU... 46 2.3 1
(AC165977) Bos taurus clone CH240-177B7, WORKING DRAFT SEQUE... 46 2.3 1
(ER473776) 1092963979738 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.3 1
(EJ972555) 1093022093167 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1
(EJ841774) 1093017835821 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1
(CZ410411) 1006114 RP42 Bos taurus genomic clone RP42-169J24... 46 2.3 1
(CC925815) t084o21ba.f1 TAMBT Bos taurus genomic clone t084o... 46 2.3 1
(AG358334) Mus musculus molossinus DNA, clone:MSMg01-158A01.... 46 2.3 1
(FE410037) CBTU1412.fwd CBTU_Daphnia_pulex_Chosen_One_Librar... 46 2.3 1
(FE410036) CBTU1412.rev CBTU_Daphnia_pulex_Chosen_One_Librar... 46 2.3 1
(FE403655) CBTT1837.fwd CBTT_Daphnia_pulex_Chosen_One_Librar... 46 2.3 1
(FE397515) CBTP766.fwd CBTP_Daphnia_pulex_Chosen_One_Library... 46 2.3 1
(FE350636) CBIC10011.fwd CBIC_Daphnia_pulex_Chosen_One_Libra... 46 2.3 1
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 46 2.3 1
(AM180355) Clostridium difficile 630 complete genome. 46 2.3 1
(FK049457) XABT117523.g1 Gateway compatible cien cDNA librar... 38 3.6 2
(CC818580) 1O0004F21R Oxytricha plasmid UUGC1O library Sterk... 34 3.8 2
(FK222862) XABT225291.b1 Gateway compatible cien cDNA librar... 38 4.4 2
(FF803224) XABT94866.rev Gateway compatible cien cDNA librar... 38 4.7 2
(FF738198) XABT50841.rev Gateway compatible cien cDNA librar... 38 4.8 2
(FK128222) XABT166789.g1 Gateway compatible cien cDNA librar... 38 4.9 2
(FF699919) XABT109461.rev Gateway compatible cien cDNA libra... 38 5.0 2
(AC225118) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 40 5.1 3
(FK093505) XABT144457.g1 Gateway compatible cien cDNA librar... 38 5.1 2
(EU747874) Duck hepatitis virus 1 strain B63, complete genome. 32 5.2 2
(FF734628) XABT48013.fwd Gateway compatible cien cDNA librar... 38 5.3 2
(ER505109) 1093015417804 Global-Ocean-Sampling_GS-35-01-01-1... 36 6.6 2
(BX537133) Zebrafish DNA sequence from clone DKEY-90M5 in li... 38 8.3 7
(AL732321) Mouse DNA sequence from clone RP23-167N17 on chro... 44 8.9 1
(AL603837) Mouse DNA sequence from clone RP23-254F2 on chrom... 44 8.9 1
(AC084823) Mus Musculus Strain C57BL6/J chromosome 8 BAC, RP... 44 8.9 1
(EU963011) Zea mays clone 247264 deoxyribonuclease tatD mRNA... 44 8.9 1
(BT066547) Zea mays full-length cDNA clone ZM_BFb0022G21 mRN... 44 8.9 1
(EA074718) Sequence 2076 from patent US 7183083. 44 8.9 1
(DM114035) A method for identification, isolation and produc... 44 8.9 1
(DL235755) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 44 8.9 1
(DD164454) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 44 8.9 1
(DD089059) A method for identification, isolation and produc... 44 8.9 1
(CS274495) Sequence 443 from Patent EP1630172. 44 8.9 1
(CS253158) Sequence 443 from Patent EP1616876. 44 8.9 1
(AX695674) Sequence 1301 from Patent WO03008583. 44 8.9 1
(AX584066) Sequence 443 from Patent WO02059148. 44 8.9 1
(AX145393) Sequence 4115 from Patent WO0134809. 44 8.9 1
(AX145380) Sequence 4102 from Patent WO0134809. 44 8.9 1
(AX141431) Sequence 153 from Patent WO0134809. 44 8.9 1
(GN070745) Sequence 1301 from Patent EP2034030. 44 8.9 1
(GC557489) Sequence 1200 from patent US 7416862. 44 8.9 1
(AR888415) Sequence 2076 from patent US 7060458. 44 8.9 1
(AR486029) Sequence 4115 from patent US 6703492. 44 8.9 1
(AR486016) Sequence 4102 from patent US 6703492. 44 8.9 1
(AR483658) Sequence 153 from patent US 6703492. 44 8.9 1
(AL139336) Human DNA sequence from clone RP3-440M1 on chromo... 44 8.9 1
(AC107853) Mus musculus clone RP23-1I10, WORKING DRAFT SEQUE... 44 8.9 1
(CU329664) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.9 1
(AL451078) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 8.9 1
(AC233967) Zea mays chromosome 2 clone ZMMBBb-606G9; ZMMBBb0... 44 8.9 1
(AC231836) Zea mays chromosome 2 clone ZMMBBb-533G9; ZMMBBb0... 44 8.9 1
(AC217887) Zea mays chromosome 9 clone ZMMBBb-139A6; ZMMBBb0... 44 8.9 1
(AC209206) Zea mays chromosome 10 clone CH201-105B22; ZMMBBc... 44 8.9 1
(AC206993) Zea mays chromosome 9 clone CH201-115M15; ZMMBBc0... 44 8.9 1
(AC205109) Zea mays chromosome 2 clone CH201-404N12; ZMMBBc0... 44 8.9 1
(AC194353) Zea mays chromosome 10 clone ZMMBBb-484P14; ZMMBB... 44 8.9 1
(AC189797) Zea mays chromosome 7 clone CH201-127N17; ZMMBBc0... 44 8.9 1
(AC184996) Bos taurus clone CH240-310J8, WORKING DRAFT SEQUE... 44 8.9 1
(AY103731) Zea mays PCO061870 mRNA sequence. 44 8.9 1
(AZ670500) ENTHV93TR Entamoeba histolytica Sheared DNA Entam... 44 8.9 1
(AZ656533) 1M0532D11F Mouse 10kb plasmid UUGC1M library Mus ... 44 8.9 1
(FH695017) CHO_OF5126xi01r1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 8.9 1
(FH227275) CHO_OF3100xi06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.9 1
(FH179551) CHO_OF3415xe09f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.9 1
(ER522302) 1093015592733 Global-Ocean-Sampling_GS-35-01-01-1... 44 8.9 1
(EJ064898) 1095458029240 Global-Ocean-Sampling_GS-26-01-01-1... 44 8.9 1
(DX848045) ZMMBLz0001B07.f ZMMBLz Zea mays genomic clone ZMM... 44 8.9 1
(DE276382) Oryzias latipes DNA, clone: ola1-228K14.F, genomi... 44 8.9 1
(CZ215468) AIAA-aae90g03.g1 Ancylostoma caninum whole genome... 44 8.9 1
(CW460818) fsbb001f208c24f0 Sorghum methylation filtered lib... 44 8.9 1
(CU192813) Equus caballus GSS, BAC clone CH241-362F1, SP6 en... 44 8.9 1
(CL160161) 104_350_10804778_116_31823_218 Sorghum methylatio... 44 8.9 1
(CG443668) OGVHT01TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 8.9 1
(CC989958) ZUADK76TV ZM_3.0_4.0_KB Zea mays genomic clone ZM... 44 8.9 1
(CC735081) OGVAF41TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 8.9 1
(BZ547572) OGADZ36TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 44 8.9 1
(EB818158) ZM_BFb0374O09.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(EB706589) ZM_BFb0353G21.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(EB670347) 81Y_JR_F01 pAPO Cenchrus ciliaris cDNA 5', mRNA s... 44 8.9 1
(DY623261) ZM_BFb0293P11.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DY541642) ZM_BFb0366L17.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DY537016) ZM_BFb0271A05.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DY402588) V-946-7A-A05.Gal4-R UGV-Reseq Zea mays cDNA, mRNA... 44 8.9 1
(DV549707) 1000066-B11.GAD10-F UGI-Reseq Zea mays cDNA, mRNA... 44 8.9 1
(DV527320) ZM_BFb0215E24.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DV174965) ZM_BFb0179F06.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DT948862) ZM_BFb0137O03.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DT650472) ZM_BFb0114B06.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DT617863) ACAH-aaa32e09.g1 Hydra_EST_UCI-10 Hydra magnipapi... 44 8.9 1
(DR972244) ZM_BFb0095F04.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(DR815613) ZM_BFb0045N18.f ZM_BFb Zea mays cDNA 3', mRNA seq... 44 8.9 1
(DR799471) ZM_BFb0022G21.r ZM_BFb Zea mays cDNA 5', mRNA seq... 44 8.9 1
(CO518401) 3530_1_120_1_A11.x_1 3530 - Full length cDNA libr... 44 8.9 1
(CJ429973) Molgula tectiformis cDNA, larva clone:mtlv016b13,... 44 8.9 1
(CJ422676) Molgula tectiformis cDNA, larva clone:mtlv010o07,... 44 8.9 1
(CJ366343) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 8.9 1
(CJ359867) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 8.9 1
(CF648570) 3530_1_56_1_F08.x_1 3530 - Full length cDNA libra... 44 8.9 1
(CD428894) ETH1_1_H11.b1_A002 Ethylene-treated seedlings Sor... 44 8.9 1
(BF693780) 602082321F1 NIH_MGC_81 Homo sapiens cDNA clone IM... 44 8.9 1
(GE285551) CBYT2343.g1 CBYT Trichoderma atroviride culture g... 44 8.9 1
(GE274486) CBWT4507.g1 CBWT Trichoderma atroviride culture i... 44 8.9 1
(FL812442) CCGG12890.b1 CCGG Panicum virgatum late flowering... 44 8.9 1
(FL145772) 1041930 CERES-191 Zea mays cDNA clone 216775 5', ... 44 8.9 1
(FL145771) 1037860 CERES-191 Zea mays cDNA clone 212705 5', ... 44 8.9 1
(FL145769) 1097616 CERES-197 Zea mays cDNA clone 244219 5', ... 44 8.9 1
(FL145768) 978622 CERES-177 Zea mays cDNA clone 209383 5', m... 44 8.9 1
(FL145767) 2962965 CERES-227 Zea mays cDNA clone 504589 5', ... 44 8.9 1
(FL145764) 2935551 CERES-227 Zea mays cDNA clone 487710 5', ... 44 8.9 1
(FL145762) 2770667 CERES-226 Zea mays cDNA clone 468933 5', ... 44 8.9 1
(FL145761) 1037903 CERES-191 Zea mays cDNA clone 212748 5', ... 44 8.9 1
(FL145760) 1041738 CERES-191 Zea mays cDNA clone 216583 5', ... 44 8.9 1
(FL145759) 1303335 CERES-197 Zea mays cDNA clone 285013 5', ... 44 8.9 1
(FL145757) 1856082 CERES-225 Zea mays cDNA clone 400991 5', ... 44 8.9 1
(FL145754) 25414569 CERES-503 Zea mays cDNA clone 1671068 5'... 44 8.9 1
(FL145752) 1741530 CERES-222 Zea mays cDNA clone 393809 5', ... 44 8.9 1
(FL145751) 1304866 CERES-197 Zea mays cDNA clone 285667 5', ... 44 8.9 1
(FL145750) 1633657 CERES-214 Zea mays cDNA clone 368254 5', ... 44 8.9 1
(FL145749) 978446 CERES-177 Zea mays cDNA clone 209207 5', m... 44 8.9 1
(FL145748) 1528439 CERES-197 Zea mays cDNA clone 335615 5', ... 44 8.9 1
(FL145747) 1100661 CERES-197 Zea mays cDNA clone 247264 5', ... 44 8.9 1
(FL145744) 1040260 CERES-191 Zea mays cDNA clone 215105 5', ... 44 8.9 1
(FL145743) 1741690 CERES-227 Zea mays cDNA clone 393969 5', ... 44 8.9 1
(FL145742) 1037961 CERES-191 Zea mays cDNA clone 212806 5', ... 44 8.9 1
(FL145739) 977144 CERES-177 Zea mays cDNA clone 207901 5', m... 44 8.9 1
(FL145738) 1100100 CERES-197 Zea mays cDNA clone 246703 5', ... 44 8.9 1
(FL145736) 13088242 CERES-CL13 Zea mays cDNA clone 1381627 5... 44 8.9 1
(FL145732) 2962618 CERES-227 Zea mays cDNA clone 504242 5', ... 44 8.9 1
(FC552219) AIAI-aad97a11.b1 Anclostoma_caninum_EST_L3_Activa... 44 8.9 1
(AW455727) 707090F05.x1 707 - Mixed adult tissues from Walbo... 44 8.9 1
(CP000822) Citrobacter koseri ATCC BAA-895, complete genome. 44 8.9 1
(CP000029) Staphylococcus epidermidis RP62A, complete genome. 44 8.9 1
(AF270075) Staphylococcus epidermidis strain SR1 clone step.... 44 8.9 1
(AF270062) Staphylococcus epidermidis strain SR1 clone step.... 44 8.9 1
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g... 44 8.9 1
>(BJ413814) Dictyostelium discoideum cDNA clone:ddv17f01, 5' end,
single read.
Length = 676
Score = 1035 bits (522), Expect(3) = 0.0
Identities = 522/522 (100%)
Strand = Plus / Plus
Query: 172 tgcagttcaaccaattttagtaccaacaataataaaggagtcaactaaaaatgaaattat 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tgcagttcaaccaattttagtaccaacaataataaaggagtcaactaaaaatgaaattat 214
Query: 232 tgatattggtgcaaatttagctgataaatcatttgaaagagatattgatcaaattttaga 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tgatattggtgcaaatttagctgataaatcatttgaaagagatattgatcaaattttaga 274
Query: 292 aagaggttataataaaggtgttacaaaaattataattacaggtacatcagttaaatcatc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aagaggttataataaaggtgttacaaaaattataattacaggtacatcagttaaatcatc 334
Query: 352 aattaaagcaatacaattaattgagagtaataagagaaagaaaggattagttgaactatt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aattaaagcaatacaattaattgagagtaataagagaaagaaaggattagttgaactatt 394
Query: 412 ttcaacggttggagttcatccacattcagcagaggaaacattgaaaatgaatggtggtag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttcaacggttggagttcatccacattcagcagaggaaacattgaaaatgaatggtggtag 454
Query: 472 tggtgagaaagcacaagatgagttgagacaattgataaagagtaatttaaatgttgttaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tggtgagaaagcacaagatgagttgagacaattgataaagagtaatttaaatgttgttaa 514
Query: 532 atcagttggtgaatgtggtttggatttcaatcgtaatttcagctcacatgcaactcaaat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atcagttggtgaatgtggtttggatttcaatcgtaatttcagctcacatgcaactcaaat 574
Query: 592 cgaaatgtttgatagacaaatccaattaggaatagagtttaaattaccattattcattca 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cgaaatgtttgatagacaaatccaattaggaatagagtttaaattaccattattcattca 634
Query: 652 cgagagagatgcacataaacaattttgcactgtcgttgaaaa 693
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 cgagagagatgcacataaacaattttgcactgtcgttgaaaa 676
Score = 105 bits (53), Expect(3) = 0.0
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 45 tgaacgatcatgacgattttccacctttaggttcaaaaccagtaaagaggaca 97
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28 tgaacgatcatgacgattttccacctttaggttcaaaaccagtaaagaggaca 80
Score = 38.2 bits (19), Expect(3) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 129 gtaatggattttcatatag 147
|||||||||||||||||||
Sbjct: 112 gtaatggattttcatatag 130
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 884,569,750
Number of extensions: 53420505
Number of successful extensions: 4122894
Number of sequences better than 10.0: 159
Length of query: 834
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 810
Effective length of database: 104,103,628,548
Effective search space: 84323939123880
Effective search space used: 84323939123880
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home