Dictyostelium discoideum cDNA Contig-U09510-1

Assembled

Chromosomal Location of Contig-U09510-1

Sequence Contig-U09510-1

GTAATAATAA AAAAATAATA ATACTAAAAA AAAAAAAAAA AAATGTCAAA
TAATGAAAAT ATTAAAAATT TAATTGATAT AAATAATATA AATAATAATT
TAAATCAATC ATATTGGGAA AAGAAATCAT TATCAAAATA TGATTATATT
GTAATTGGAT CAGGTATAGT TGGATTATCA ACAGCAATTT CAATTAAAGA
GAAATCACCA CAATCATCAG TATTGATATT GGAAAGAGAT ACACATCCAA
ATGGAGCATC ---------- TAATTGTTCA TGTTGAGAAT CCATTTGCAT
TATCAAATTC AACATTAACT AAACCAATGG AATTTCAATG TAAGAAATTG
GCAATTTGTA CAAACGCATT CACTGGTGAT TTGGTAAATG ATATTGATAT
TACACCTGGT AGAGGACAAG TTTTGATAAC TGATCCAATT CCAGGTTTAC
AATTAAAAGG TATTTATCAT TTTGATGAAG GTTTTTATTA CTTTCGTGAA
AAAGATGGTT GTATCTTATT TGGTGGTGGT AGAAATTTAG ATTTTAAAAC
TGAAGCTACC ACAGAATTTA AATTAAATCC AATGATTTTA AATAAACTTT
ATCAACTATT ACAAGAACAT ATCATTCCAA ATACAAAATT CACTGTAAAT
ACAGTTTGGT GTGGTATTAT GGCATTTGGT AAAGATAAAA AACCAATTAT
TGAATTTTTA AATGGTTCAA AAAATGTGGT TTTAGGTGTG CGTATGGGTG
GTATGGGTGT TGCAATTGGT TCCTTAGTTG GTAAATTATT ATCAAATATG
TTAATTAATT CAAATAATTT AAATTCAAAT AATAATAATA ATACTATTAA
TAATTTAATT TCAAAATTAT AAAATTTAAT TATTATTACT ATTTATATCA
AAAAAAAAAA AAAAAGTAAT ATATATAA

Translated Amino Acid Sequence Contig-U09510-1

viikk**y*KKKKKMSNNENIKNLIDINNINNNLNQSYWEKKSLSKYDYIVIGSGIVGLS
TAISIKEKSPQSSVLILERDTHPNGA---

---IVHVENPFALSNSTLTKPMEFQCKKLAICTNAFTGDLVNDIDITPGRGQVLITDPIP
GLQLKGIYHFDEGFYYFREKDGCILFGGGRNLDFKTEATTEFKLNPMILNKLYQLLQEHI
IPNTKFTVNTVWCGIMAFGKDKKPIIEFLNGSKNVVLGVRMGGMGVAIGSLVGKLLSNML
INSNNLNSNNNNNTINNLISKL*nliiitiyikkkkksniy

Homology Contig-U09510-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09510-1 (Contig-U09510-1Q) /CSM_Contig/Conti...  1334  0.0
Contig-U11123-1 (Contig-U11123-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U11902-1 (Contig-U11902-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09400-1 (Contig-U09400-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11492-1 (Contig-U11492-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U13163-1 (Contig-U13163-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U12505-1 (Contig-U12505-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U11723-1 (Contig-U11723-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U11702-1 (Contig-U11702-1Q) /CSM_Contig/Conti...    38  0.017

Homology Contig-U09510-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU039046) Dictyostelium discoideum slug cDNA, clone SSM318.     1013   0.0    1
(AU074874) Dictyostelium discoideum slug cDNA, clone SSM318.      196   1e-45  1
(AY170918) Dictyostelium discoideum pats1 gene, partial cds.       36   0.40   3
(EJ215801) 1092351100413 Global-Ocean-Sampling_GS-27-01-01-1...    44   0.54   2
(BX936422) Zebrafish DNA sequence from clone DKEY-10I19 in l...    48   0.64   1
(CQ587933) Sequence 15691 from Patent WO0171042.                   48   0.64   1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    48   0.64   1
(AC009202) Drosophila melanogaster, chromosome 2L, region 36...    48   0.64   1
(AC172956) Bos taurus clone CH240-279L4, WORKING DRAFT SEQUE...    48   0.64   1
(AC018094) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    48   0.64   1

Homology Contig-U09510-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AM398681_2284(AM398681|pid:none) Flavobacterium psychrophilum JI...   129   1e-28
CU207366_3296(CU207366|pid:none) Gramella forsetii KT0803 comple...   123   8e-27
CP000685_632(CP000685|pid:none) Flavobacterium johnsoniae UW101,...   123   1e-26
CP000159_1339(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    47   0.001
CP000790_1968(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    46   0.002
CP000806_3357(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    46   0.002
CP000739_455(CP000739|pid:none) Sinorhizobium medicae WSM419 pla...    45   0.003
CP000510_2576(CP000510|pid:none) Psychromonas ingrahamii 37, com...    45   0.005
CP001287_1845(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    45   0.005
CT573326_1585(CT573326|pid:none) Pseudomonas entomophila str. L4...    45   0.005