Homology Contig-U09487-1 vs DNA
Query= Contig-U09487-1 (Contig-U09487-1Q) /CSM_Contig/Contig-U09487-1Q.Seq.d
(603 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU038636) Dictyostelium discoideum slug cDNA, clone SSL283. 379 e-124 2
(AU074570) Dictyostelium discoideum slug cDNA, clone SSL283. 343 5e-90 1
(GR569465) CBTF4602.g1 CBTF Dictyostelium purpureum 12 hr ve... 60 2e-14 4
(GR584909) CCAA2802.g1 CCAA Dictyostelium purpureum 0 hr sta... 60 1e-04 1
(CU302195) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.10 1
(CU582821) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.14 4
(CU862080) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.23 2
(CR853293) Zebrafish DNA sequence from clone CH211-81J7 in l... 36 0.24 2
(AL672097) Zebrafish DNA sequence from clone BUSM1-37O5 in l... 36 0.24 2
(BX294374) Zebrafish DNA sequence from clone CH211-260F12 in... 36 0.27 2
(BX237904) Danio rerio genomic clone DKEY-262L5, genomic sur... 36 0.31 2
(AC116523) Mus musculus chromosome 9, clone RP24-349L11, com... 48 0.41 1
(BH039369) RPCI-24-388B21.TJB RPCI-24 Mus musculus genomic c... 48 0.41 1
(EJ805169) 1093017454765 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.41 1
(EJ793530) 1093017388525 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.41 1
(AC188200) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 40 0.47 5
(AC187323) Canis Familiaris chromosome 33, clone XX-35D10, c... 44 0.49 3
(AC181053) Strongylocentrotus purpuratus clone R3-3050L9, WO... 38 0.58 4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.73 6
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 0.92 10
(AC089984) Homo sapiens 12q BAC RP11-2H8 (Roswell Park Cance... 44 1.2 3
(AC009759) Homo sapiens clone RP11-2H8, WORKING DRAFT SEQUEN... 44 1.3 4
(AC116084) Rattus norvegicus clone CH230-91A23, *** SEQUENCI... 34 1.3 7
(AC126566) Homo sapiens clone RP11-790C17, *** SEQUENCING IN... 44 1.5 4
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 42 1.5 7
(AC002391) Arabidopsis thaliana chromosome 2 clone T20D16 ma... 46 1.6 1
(Z81094) Caenorhabditis elegans Cosmid F58G11. 46 1.6 1
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 46 1.6 1
(AC106686) Rattus norvegicus clone CH230-62D13, *** SEQUENCI... 46 1.6 1
(ER514652) 1093015489051 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.6 1
(ER431616) 1092963780386 Global-Ocean-Sampling_GS-35-01-01-1... 46 1.6 1
(AQ259391) nbxb0022H04r CUGI Rice BAC Library Oryza sativa J... 46 1.6 1
(DU191527) 1098538172763 CHORI-243 Ovis aries genomic clone ... 46 1.6 1
(BZ094696) CH230-214M4.TJB CHORI-230 Segment 1 Rattus norveg... 46 1.6 1
(BH687239) BOMHK51TF BO_2_3_KB Brassica oleracea genomic clo... 46 1.6 1
(EY061774) CATF12945.fwd CATF Artemisia annua, Tanzanian, fr... 46 1.6 1
(EY061773) CATF12945.rev CATF Artemisia annua, Tanzanian, fr... 46 1.6 1
(AE001438) Clostridium acetobutylicum ATCC 824 megaplasmid p... 42 1.9 3
(AL512455) Human DNA sequence *** SEQUENCING CANCELLED *** f... 38 2.0 4
(ET104097) QM0AAB24AD05RM1 CCER1 Citrus clementina genomic c... 38 2.2 2
(AL627346) Mouse DNA sequence from clone RP23-313I9 on chrom... 38 2.2 3
(CW034142) 104_264_10502375_114_30358 Sorghum methylation fi... 36 2.2 2
(DQ870926) Bombus ignitus mitochondrion, complete genome. 38 2.2 4
(CW256187) 104_721_11226652_116_35141_014 Sorghum methylatio... 42 2.3 2
(AC095744) Rattus norvegicus clone CH230-8E18, *** SEQUENCIN... 36 2.5 7
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 32 2.7 2
(ET013936) MUGQ_CH252P317K23Sp6_CP591_086 CHORI-252 Vervet M... 36 2.8 2
(FI096481) MUGQ_CH252P470L02T7_CH0143_005 CHORI-252 Vervet M... 36 3.0 2
(AC140083) Rattus norvegicus strain Brown Norway clone CH230... 36 3.0 5
(AB194045) Leptotrombidium akamushi mitochondrial DNA, compl... 38 3.1 3
(ET194088) MUGQ_CH252P391G05Sp6_CP740_025 CHORI-252 Vervet M... 36 3.3 2
(FI059668) CHO_OF6640xk08r1.ab1 CHO_OF6 Nicotiana tabacum ge... 36 3.4 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 3.5 14
(EI682620) SB_BBd28-K07.R SB_BBd Sorghum bicolor genomic 3',... 36 3.5 2
(AC211072) Solanum lycopersicum chromosome 6 clone C06HBa030... 44 3.7 2
(EK265280) 1095462222672 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.8 2
(FH467578) CHO_OF4962xo20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 4.2 2
(FC808745) CBGC9869.fwd CBGC Lottia gigantea 15h 18h embryos... 32 4.2 2
(FC796250) CBGC24067.fwd CBGC Lottia gigantea 15h 18h embryo... 32 4.2 2
(FC808744) CBGC9869.rev CBGC Lottia gigantea 15h 18h embryos... 32 4.2 2
(FC718713) CBBG12316.rev CBBG Lottia gigantea 12,15,18h embr... 32 4.2 2
(FC796249) CBGC24067.rev CBGC Lottia gigantea 15h 18h embryo... 32 4.2 2
(FC802139) CBGC4873.fwd CBGC Lottia gigantea 15h 18h embryos... 32 4.3 2
(EK328021) 1095467013994 Global-Ocean-Sampling_GS-31-01-01-1... 34 4.4 3
(EA683983) Sequence 62862 from patent US 7365185. 36 5.9 2
(AC144410) Mus musculus BAC clone RP23-479N14 from chromosom... 44 6.4 1
(AC107456) Mus musculus chromosome 3, clone RP23-273L6, comp... 44 6.4 1
(CT841529) Pan troglodytes chromosome X clone CH251-347E05 m... 44 6.4 1
(CT573436) Pan troglodytes chromosome X clone PTB-077F20 map... 44 6.4 1
(CU914525) S.lycopersicum DNA sequence from clone LE_HBa-149... 44 6.4 1
(AM426583) Vitis vinifera contig VV78X266542.9, whole genome... 44 6.4 1
(BD452900) Diagnosis of Diseases Associated with tumor suppr... 44 6.4 1
(AX251379) Sequence 347 from Patent WO0168912. 44 6.4 1
(AL844507) Plasmodium falciparum 3D7 chromosome 8. 44 6.4 1
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 44 6.4 1
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 44 6.4 1
(AC120142) Mus musculus chromosome 3 clone RP24-322A9 map 3,... 44 6.4 1
(AC100342) Mus musculus clone RP23-127F6, LOW-PASS SEQUENCE ... 44 6.4 1
(CU633295) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.4 1
(AC211047) Solanum lycopersicum chromosome 6 clone C06HBa011... 44 6.4 1
(AC199654) Echinops telfairi clone CH238-482N13, WORKING DRA... 44 6.4 1
(DX232020) OR_ABa0112K23.r OR_ABa Oryza ridleyi genomic clon... 44 6.4 1
(CZ993051) 180109 Tomato MboI BAC Library Solanum lycopersic... 44 6.4 1
(CU808481) A BAC library has been constructed from PN40024 g... 44 6.4 1
(CE143900) tigr-gss-dog-17000371268322 Dog Library Canis lup... 44 6.4 1
(BZ456030) BONSH11TF BO_1.6_2_KB_tot Brassica oleracea genom... 44 6.4 1
(GD229593) G1045P372RG17.T1 Aplysia californica Pooled Norma... 44 6.4 1
(EX253531) PY05036X1H02.f1 PY05 Carica papaya cDNA, mRNA seq... 44 6.4 1
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen... 44 6.4 1
(CP001083) Clostridium botulinum Ba4 str. 657, complete genome. 44 6.4 1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 44 6.4 1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 44 6.4 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 44 6.4 1
(CP000727) Clostridium botulinum A str. Hall, complete genome. 44 6.4 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 44 6.4 1
(CP000382) Clostridium novyi NT, complete genome. 44 6.4 1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 44 6.4 1
(AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN... 44 6.4 1
(AC006081) Arabidopsis thaliana chromosome 2 clone T2G17 map... 38 7.2 3
(AC232519) Brassica rapa subsp. pekinensis clone KBrB072K21,... 36 7.7 5
(AC205336) Zea mays chromosome unknown clone CH201-83J21; ZM... 38 7.8 2
(AM437848) Vitis vinifera contig VV78X108357.6, whole genome... 40 8.0 2
(AZ326044) 1M0048J22R Mouse 10kb plasmid UUGC1M library Mus ... 40 8.1 2
(CP000792) Campylobacter concisus 13826, complete genome. 42 8.3 7
(EE600618) BT-TYLCV-023-1-D4-T3_D04 Whitefly Bemisia tabaci ... 30 8.4 3
(FP312691) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 9.6 4
>(AU038636) Dictyostelium discoideum slug cDNA, clone SSL283.
Length = 339
Score = 379 bits (191), Expect(2) = e-124
Identities = 203/203 (100%)
Strand = Plus / Plus
Query: 266 tcattgtaaagacccagntggtaatcatatttcaattcatactagatcattagaaccaaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcattgtaaagacccagntggtaatcatatttcaattcatactagatcattagaaccaaa 60
Query: 326 ttcttctcatcatagattctctttaggttatggtaanccaaaaaatantaanccaatgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcttctcatcatagattctctttaggttatggtaanccaaaaaatantaanccaatgaa 120
Query: 386 tgatggtattgaacatgaatgttttattaaatattcaacttcaaatggtgatgatggtga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgatggtattgaacatgaatgttttattaaatattcaacttcaaatggtgatgatggtga 180
Query: 446 tagtacaattgatgtttggttag 468
|||||||||||||||||||||||
Sbjct: 181 tagtacaattgatgtttggttag 203
Score = 103 bits (52), Expect(2) = e-124
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 538 cttgtttcattggtatgactgcttcaactggtggtttaaaacaagctcatat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cttgtttcattggtatgactgcttcaactggtggtttaaaacaagctcatat 324
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 629,523,479
Number of extensions: 42005845
Number of successful extensions: 3846111
Number of sequences better than 10.0: 107
Length of query: 603
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 579
Effective length of database: 104,103,628,548
Effective search space: 60276000929292
Effective search space used: 60276000929292
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home