Dictyostelium discoideum cDNA Contig-U09478-1

Assembled

Chromosomal Location of Contig-U09478-1

Sequence Contig-U09478-1

ATTTGCATGA GTAACGAAAA TTTTAGAGAA AATAATTTAG GGATTGGATT
ATCATATACA TTAACAATGG CAAATATAAT TGAGGGAACA TCATACCAAA
AGAAGAGAAG TTTATTTGAT GCAGTTTATC AAAAATTAAT AAATAATGGT
TCCCCAAATT TATCAGATCA TAATTACAAT AATGGAAATA CTAGTTTCAC
AAGTGGAAAA ATAAATAAAA AGAAATTAAA TTCATCAAAA ACATCAACAT
CACCAATTGA TTTAAATCAA TTATATAAAT CATTTCAAGT TTTTCAAGGC
GCACAATTAT TATTATGGCA TGATACAGCT GGACCAGTGA TAGAACAATC
ATGGTATTAT AAAGAGTTAC CATTAGATTT TAAACAATTC ATAGCAAGAC
AAACATTATG TGGTTTAGAT CCAAAGAATA CATGTGATGA ATTTAGATTC
AACATTTATT CTGATCAAGG TGTTTTAGTA TTATCTCATA TTTTCAATTC
AAAATATAAT GATAGTTTAA CAAAGTTTGC TCTATCACTT TATTTATCAA
TTAATTTCTT TAATGATTAT TTACCAATTC ATGATATAAT AGTTGATAGA
ATAACTTGTT TAT------- ---ATATAAA TAATATAAAT AATAATAATA
ATTCATGGTT AAAACAAATT GATGAAAGAT TACATTTTTC ACTTAGACCT
TCAACAGTAG TTGATTTAGA TAAAGGTATT GTTTATCAAA CAAAGAGGAA
TCATGAATAT GTTGATAAGA GAATTGACTT ATTTTCAAAG TTAATTGTAG
ATAATTATCA TCAAGGTAAA GAGTTTGAAA ATTTAACACC TTTTAAAAAT
TCAAATTCAA TATTTATTAC TAAAATGGTT AATGAAGTAT TTCAATTACC
ATTTCATTTA AAAGAAGTTT TCTTAATGCA ATCAATTAAA AGTTTATTAA
GAAAATCTTC AATTGTTATT ACAACACTTC AACATTTGTC GTTTACACCA
GCAATTGAAC AAAAATATAA GATTTCACAA CTATTTACAC CACCATTAAA
TGAAGTTGAT ATTGAATTAT TATATGGATT GGCAGAAAAA CTTCAATTCT
ACTTATTTGT ATCAGTAACT AAACCAGAGT CATTTGGTCT TGAAGATACA
ATTATGGAAA TTTTAGCACT ATAGATTCAA GTGAAAAAAA ATCAAAATAA
TAAATTTTTT GGACCAATAT ATTATTGTTT AGAAAAAAAA AAA

Translated Amino Acid Sequence Contig-U09478-1

ICMSNENFRENNLGIGLSYTLTMANIIEGTSYQKKRSLFDAVYQKLINNGSPNLSDHNYN
NGNTSFTSGKINKKKLNSSKTSTSPIDLNQLYKSFQVFQGAQLLLWHDTAGPVIEQSWYY
KELPLDFKQFIARQTLCGLDPKNTCDEFRFNIYSDQGVLVLSHIFNSKYNDSLTKFALSL
YLSINFFNDYLPIHDIIVDRITCL---

---INNINNNNNSWLKQIDERLHFSLRPSTVVDLDKGIVYQTKRNHEYVDKRIDLFSKLI
VDNYHQGKEFENLTPFKNSNSIFITKMVNEVFQLPFHLKEVFLMQSIKSLLRKSSIVITT
LQHLSFTPAIEQKYKISQLFTPPLNEVDIELLYGLAEKLQFYLFVSVTKPESFGLEDTIM
EILAL*iqvkknqnnkffgpiyyclekkk

Homology Contig-U09478-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09478-1 (Contig-U09478-1Q) /CSM_Contig/Conti...  1102  0.0
Contig-U11391-1 (Contig-U11391-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U05293-1 (Contig-U05293-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12462-1 (Contig-U12462-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U10906-1 (Contig-U10906-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U13946-1 (Contig-U13946-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U12533-1 (Contig-U12533-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11470-1 (Contig-U11470-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11166-1 (Contig-U11166-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U09810-1 (Contig-U09810-1Q) /CSM_Contig/Conti...    38  0.022

Homology Contig-U09478-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C94018) Dictyostelium discoideum slug cDNA, clone SSK708.       1053   0.0    2
(AU074439) Dictyostelium discoideum slug cDNA, clone SSK708.      408   e-109  1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    40   0.005  18
(DN808560) 76978890 Sea Urchin primary mesenchyme cell cDNA ...    46   0.008  2
(AL844503) Plasmodium falciparum 3D7 chromosome 4.                 38   0.010  15
(AC236450) Xenopus laevis clone CH219-33D5, complete sequence.     54   0.014  1
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                40   0.014  18
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.016  21
(CC404400) PUHRN24TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   0.018  2
(BX005320) Zebrafish DNA sequence from clone DKEY-27P3.            44   0.041  4

Homology Contig-U09478-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AK057806_1(AK057806|pid:none) Homo sapiens cDNA FLJ25077 fis, cl...    51   1e-04
BC150106_1(BC150106|pid:none) Bos taurus hypothetical LOC506309,...    51   1e-04
AK167354_1(AK167354|pid:none) Mus musculus 14 days pregnant adul...    50   1e-04
(Q66HC3) RecName: Full=Uncharacterized protein C9orf72 homolog; ...    50   1e-04
BC077130_1(BC077130|pid:none) Danio rerio zgc:100846, mRNA (cDNA...    42   0.035
AM910990_116(AM910990|pid:none) Plasmodium knowlesi strain H chr...    33   6.6
DQ182344_1(DQ182344|pid:none) Austrobaileya scandens maturase K ...    35   7.2
BA000026_155(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    35   7.2
DQ401347_1(DQ401347|pid:none) Austrobaileya scandens maturase K ...    35   7.2
(Q59NN8) RecName: Full=Hsp70 nucleotide exchange factor FES1;          35   7.2