<Clone: Contig-U09407-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U09407-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U09407-1

< more Chromosomal info >

Chromosome Number 5
Length 5062330
Start Poin 884,227
End Point 885,238
Strand PLUS

Sequence Contig-U09407-1

ATAATTTAAT ATTCTCTATT ATAATAATAT AATAATATAA TAATATATTT
ATAAAAAAAA AAAAAAAAAA AAAAAAAAAA AATGAGAATA TTATTATTAT
TATTTTTATT AATAGTTGCA AACTTCCATA CAATTAGTTC AAATGGTATA
TACTATGATC CATTAAGAAA TCAAACCTAT GATCTAAAAA CAATATTTAA
ACAAAATGAA AAAAATTATT TTACTACAGG TAATTCAAGT TTGGGGTATA
ATGGTGAACA TTTTTCAATA AATTTTAATT TATGTAATGA TATTGATTAT
AGTTATTGTA ATGGAATTTC ATCAATTTGC CAATATTTCT ATGATGAAAA
TTCATTCAAG GGTATTTTCG ACCTAGGAAC ATTTTCAAAT GTTGAATTTG
ACGATAACCA ATTAACAATA GTTTATAAAA GTATGGTATT TGATAAAAAT
GGTTACAATG ATTGTCCTGG TGCTATTGAA AAGAATAGAA GGGTTACATA
CTTTAATT-- --------CT TTGGAACTGA ATATAGGAAA TCCAAAATTT
AATATTACAA TTGGCGATAA TAATGAAAAT TGTAGAAATG TAACACAATT
AAGTGAATCA CTAATTAAAT GTGATATTGG TCCTGGCTTT GGGTTTAAAG
ATGTTTATTT AGAAGATAGA GGTTTATCAA TTTATAAACA ATATCAATTA
CAATATATTG GTAATATTAA TACTAATGCA AATAATAACA ATAATAATAA
TGCAAATGAT GAAAATGATA ATTCATCAAA TTCAATAATA TCAGGTTATA
AAATCGAAAT AATAGTTTTA GCATGTGCTA TTGTTGCTTC AATTATAATA
ATGATATTTA CATATAGATT CATAAAGAAA AGACAAGAAA AATTAAAAAT
NGNGAAAACT CAACAATTAA ATAGTAAAAA TATAATAATT GCCTAAAATA
TTTTTTAAAA TACTAAATAA ATAAAAATAA AAATNGAAAT AAAAATGAAA
AATTCCAAAT TTGGTAATAA AAAAAAAAAA AAAAAAAAAA AAAAAAA

Translated Amino Acid Sequence Contig-U09407-1

<All Frames> 
ii*ysll**ynniiiyl*KKKKKKKKKMRILLLLFLLIVANFHTISSNGIYYDPLRNQTY
DLKTIFKQNEKNYFTTGNSSLGYNGEHFSINFNLCNDIDYSYCNGISSICQYFYDENSFK
GIFDLGTFSNVEFDDNQLTIVYKSMVFDKNGYNDCPGAIEKNRRVTYFN---

---LELNIGNPKFNITIGDNNENCRNVTQLSESLIKCDIGPGFGFKDVYLEDRGLSIYKQ
YQLQYIGNINTNANNNNNNNANDENDNSSNSIISGYKIEIIVLACAIVASIIIMIFTYRF
IKKRQEKLKXXKTQQLNSKNIIIA*nif*ntk*ikikxeikmknskfgnkkkkkkkkk


Homology Contig-U09407-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U09407-1 (Contig-U09407-1Q) /CSM_Contig/Conti...  1055  0.0
Contig-U11301-1 (Contig-U11301-1Q) /CSM_Contig/Conti...    46  8e-05
Contig-U05511-1 (Contig-U05511-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U04586-1 (Contig-U04586-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U13270-1 (Contig-U13270-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11418-1 (Contig-U11418-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11330-1 (Contig-U11330-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12553-1 (Contig-U12553-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U11758-1 (Contig-U11758-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U10335-1 (Contig-U10335-1Q) /CSM_Contig/Conti...    40  0.005


Homology Contig-U09407-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(AU038069) Dictyostelium discoideum slug cDNA, clone SSH230.      317   e-123  2
(DH305983) Oryzias latipes Fosmid clone:GOLWFno657_f07, reve...    44   0.46   2
(BU573800) PA__Ea0005E11f Almond developing seed Prunus dulc...    46   0.48   2
(EK177709) 1095458105785 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.52   2
(DH337657) Oryzias latipes Fosmid clone:GOLWFno705_o17, reve...    48   0.72   1
(DH285649) Oryzias latipes Fosmid clone:GOLWFno627_c12, forw...    48   0.72   1
(DH210555) Oryzias latipes Fosmid clone:GOLWFno534_a01, forw...    48   0.72   1
(DH059665) Oryzias latipes Fosmid clone:GOLWFno113_l12, forw...    48   0.72   1
(EX163005) LY_YIT_DP1060 Dermatophagoides pteronyssinus cDNA...    38   1.5    2
(AF170857) Pyrgus communis cytochrome c oxidase I (COI) gene...    40   1.8    2


Homology Contig-U09407-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso...    55   5e-06
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom...    45   0.004
AL844507_241(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    37   1.1
AL844509_243(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    36   2.0
AF250284_192(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    35   3.3
(O32321) RecName: Full=Pesticidal crystal protein cry20Aa; AltNa...    35   3.3
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso...    34   7.4
CP000759_32(CP000759|pid:none) Ochrobactrum anthropi ATCC 49188 ...    34   7.4
AE015927_585(AE015927|pid:none) Clostridium tetani E88, complete...    34   9.7
BX571861_29(BX571861|pid:none) Photorhabdus luminescens subsp. l...    34   9.7


<Clone: Contig-U09407-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home