Dictyostelium discoideum cDNA Contig-U09347-1

Assembled

Chromosomal Location of Contig-U09347-1

Sequence Contig-U09347-1

ATAATTCATT AGTTTGGTTT AGTGATGTTT CAATTGAATC AATTAATAAT
GTTGAAAATT TAATTAAATT ATTACAGGGT ACAAATTTTC AATGTAAAAA
TTGTTTATTT AAAAATCCAA TACAAAGTAG TAATATTTAT TTATTTTCAG
TATCATCAGA ATCAATAGTA AAGTTAACAA ATTCAATAAT TAGAAATTCA
TCATTAATTG CATTAATTGA TGAGAAATCA AATGTAACAT TTGAAAATTG
TACATTTTTA AATCTTTATT CAGCAAAAGG TGAAATTTTT AAATGTTTAT
CAAGTTCATC ATTAACATTT GAAAATTGTA ATTTTAATCA AGTTTATTGT
ATAACAAATG GATTTATATT AATTTCAAAT TATTCAATAA ----------
GAAATTTCAT TCAATATTCA AAAAAGTGGT GATTTTTAAA CAGTGATCGA
AAGTGGGTCA CTAAATTNAT ATCAACAAAT ATAACAAATN ATCGAATGGA
AATCAATGGG GTAATTAAGT AGAGTAAGTG ATGGACCGAT GGTAGTTTTA
TNAATAGTTA AATTAGTTCA ACCAATTCAA AAACGGGTTN AATTGGTTAA
TTAATCAATT CAATGGTATC ATTTGATAGT AGTATTTTAA TAAATAATTC
AAATTCTAAT CTGGGTGGTG TAACATATTT CGATAGAAGT TCAAGATATT
ATGAATNAAC AAGATGTTCA TTTCAATTGA ATTCAGCTTC AGTGGGTGGT
GTATTTTATA CTGAAAATTT TATTTTTAAT TTTTATCAAA TTTTAAAAAA
TAATAAATTT TATCCATATA ATAATTTCAC TTTAAATAAA GCNATCTATG
GTGATTTTGT TGCATCATCA CCAACTCTAA TTAAAAAAAA AAAAAAAAAA
AA

Translated Amino Acid Sequence Contig-U09347-1

NSLVWFSDVSIESINNVENLIKLLQGTNFQCKNCLFKNPIQSSNIYLFSVSSESIVKLTN
SIIRNSSLIALIDEKSNVTFENCTFLNLYSAKGEIFKCLSSSSLTFENCNFNQVYCITNG
FILISNYSI---

---KFHSIFKKVVIFKQ*skvgh*ixinkynkxsngnqwgn*ve*vmdrw*fyx*ln*fn
qfkngxnwlinqfngii***yfnk*fkf*sgwcnifr*kfkil*xnkmfisiefsfsgwc
ily*kfyf*flsnfkk**ilsi**fhfk*sxlw*fcciitnsn*kkkkkk

Homology Contig-U09347-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09347-1 (Contig-U09347-1Q) /CSM_Contig/Conti...  1400  0.0
Contig-U14871-1 (Contig-U14871-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U14090-1 (Contig-U14090-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U11932-1 (Contig-U11932-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U09495-1 (Contig-U09495-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U03183-1 (Contig-U03183-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U02747-1 (Contig-U02747-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U13251-1 (Contig-U13251-1Q) /CSM_Contig/Conti...    36  0.064
Contig-U12163-1 (Contig-U12163-1Q) /CSM_Contig/Conti...    36  0.064

Homology Contig-U09347-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU037421) Dictyostelium discoideum slug cDNA, clone SSD617.      664   0.0    2
(AU072185) Dictyostelium discoideum slug cDNA, clone SSD617.      246   2e-85  2
(CP001668) Mycoplasma mycoides subsp. capri str. GM12 transg...    34   0.005  18
(CP001621) Mycoplasma mycoides subsp. capri str. GM12 transg...    34   0.005  18
(AP004029) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.069  2
(CR391995) Zebrafish DNA sequence from clone CH211-229I10.         40   0.091  7
(AP000366) Oryza sativa Japonica Group genomic DNA, chromoso...    50   0.094  2
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 44   0.099  11
(CP001210) Borrelia burgdorferi ZS7 plasmid ZS7_lp28-1, comp...    32   0.13   5
(DQ855265) Glycine max clone BAC GM-WBb0040I14, *** SEQUENCI...    44   0.14   5

Homology Contig-U09347-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000102_881(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    41   0.062
EF494739_23(EF494739|pid:none) Blastocystis sp. DMP/02-328 mitoc...    40   0.14
CP000102_1351(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    39   0.24
AC117072_62(AC117072|pid:none) Dictyostelium discoideum chromoso...    38   0.40
EU275726_23(EU275726|pid:none) Polysphondylium pallidum strain P...    38   0.40
AL844509_146(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.90
(Q54HT7) RecName: Full=Arrestin domain-containing protein F;           36   1.5
AY700145_5(AY700145|pid:none) Polysphondylium pallidum mitochond...    36   1.5
CP001348_2338(CP001348|pid:none) Clostridium cellulolyticum H10,...    34   5.8
CQ868305_1(CQ868305|pid:none) Sequence 6 from Patent WO200407446...    34   5.8