Homology Contig-U09332-1 vs Protein
Query= Contig-U09332-1 (Contig-U09332-1Q) /CSM_Contig/Contig-U09332-1Q.Seq.d
(853 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC115607_10(AC115607|pid:none) Dictyostelium discoideum chromoso... 122 1e-26
>AC115607_10(AC115607|pid:none) Dictyostelium discoideum chromosome
2 map 4559693-4624405 strain AX4, complete sequence.
Length = 259
Score = 122 bits (307), Expect = 1e-26
Identities = 72/146 (49%), Positives = 76/146 (52%)
Frame = +2
Query: 113 NDFNYNNKIKNESDLHNFYXXXXXXXXXXXXXXXXXXXXXXDEKRTSNENIPILKKYESP 292
N+ N NN N ++ +N DEKRTSNENIPILKKYESP
Sbjct: 86 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNDEKRTSNENIPILKKYESP 145
Query: 293 IKFSESXXXXXXXXXXXXXXXXXXXXXXXXNPVNSXXXXXXXXXXXXXXXQQSRVEPKSR 472
IKFSES NPVNS QQSRVEPKSR
Sbjct: 146 IKFSESQLLQLEQQLRQQQQIDYQQTEQIQNPVNSTTTTTTTTTTTTTTTQQSRVEPKSR 205
Query: 473 KKPYIRRAPRQKITFKYVPSHLLDQH 550
KKPYIRRAPRQKITFKYVPSHLLDQH
Sbjct: 206 KKPYIRRAPRQKITFKYVPSHLLDQH 231
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 662,579,686
Number of extensions: 7218530
Number of successful extensions: 16953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16950
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,040,966,779
Length adjustment: 127
Effective length of query: 157
Effective length of database: 634,022,584
Effective search space: 99541545688
Effective search space used: 99541545688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Dictyostelium discoideum cDNA Project Home