Homology Contig-U09284-1 vs Protein
Query= Contig-U09284-1 (Contig-U09284-1Q) /CSM_Contig/Contig-U09284-1Q.Seq.d
(790 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
FM992689_205(FM992689|pid:none) Candida dubliniensis CD36 chromo... 99 2e-19
CP000498_279(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 96 1e-18
CR382139_147(CR382139|pid:none) Debaryomyces hansenii strain CBS... 95 2e-18
AP002040_8(AP002040|pid:none) Arabidopsis thaliana genomic DNA, ... 94 4e-18
AC016795_26(AC016795|pid:none) Arabidopsis thaliana chromosome I... 94 4e-18
AP004273_12(AP004273|pid:none) Oryza sativa Japonica Group genom... 94 7e-18
AP008213_471(AP008213|pid:none) Oryza sativa (japonica cultivar-... 94 7e-18
CR812943_5(CR812943|pid:none) Zebrafish DNA sequence from clone ... 92 2e-17
BC095720_1(BC095720|pid:none) Danio rerio programmed cell death ... 92 2e-17
CR380959_209(CR380959|pid:none) Candida glabrata strain CBS138 c... 92 2e-17
(Q14690) RecName: Full=Protein RRP5 homolog; AltName: Full=Progr... 91 6e-17
BC070468_1(BC070468|pid:none) Mus musculus programmed cell death... 91 6e-17
AP007161_166(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 91 6e-17
CU928168_550(CU928168|pid:none) Kluyveromyces thermotolerans str... 91 6e-17
AK129080_1(AK129080|pid:none) Mus musculus mRNA for mKIAA0185 pr... 91 6e-17
BC038503_1(BC038503|pid:none) Mus musculus programmed cell death... 91 6e-17
BC055276_1(BC055276|pid:none) Mus musculus programmed cell death... 91 6e-17
AM920436_201(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 90 9e-17
AM270348_11(AM270348|pid:none) Aspergillus niger contig An15c021... 89 1e-16
BC167486_1(BC167486|pid:none) Xenopus laevis hypothetical protei... 87 6e-16
AE017345_128(AE017345|pid:none) Cryptococcus neoformans var. neo... 86 2e-15
CP001329_439(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 84 5e-15
(O74835) RecName: Full=rRNA biogenesis protein rrp5; AltName: Fu... 82 2e-14
CP000590_2(CP000590|pid:none) Ostreococcus lucimarinus CCE9901 c... 80 6e-14
AL929603_130(AL929603|pid:none) Trypanosoma brucei chromosome 1,... 72 2e-11
AE014187_39(AE014187|pid:none) Plasmodium falciparum 3D7 chromos... 64 6e-09
AE014297_3669(AE014297|pid:none) Drosophila melanogaster chromos... 62 3e-08
CP000582_132(CP000582|pid:none) Ostreococcus lucimarinus CCE9901... 33 0.004
AL132980_15(AL132980|pid:none) Arabidopsis thaliana DNA chromoso... 38 0.047
CR954207_339(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 32 0.10
BC044369_1(BC044369|pid:none) Danio rerio zgc:55327, mRNA (cDNA ... 31 0.13
AC135428_1(AC135428|pid:none) Oryza sativa (japonica cultivar-gr... 29 0.27
CR940348_485(CR940348|pid:none) Theileria annulata strain Ankara... 32 0.46
AC068923_2(AC068923|pid:none) Oryza sativa chromosome 10 BAC OSJ... 30 1.6
AF016441_4(AF016441|pid:none) Caenorhabditis elegans cosmid M03F... 36 1.6
AP008216_963(AP008216|pid:none) Oryza sativa (japonica cultivar-... 30 1.7
AP007154_646(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 30 2.6
GN099344_1(GN099344|pid:none) Sequence 4125 from Patent WO200903... 30 3.4
(Q527H0) RecName: Full=Pre-mRNA-splicing factor CLF1; &EU826017... 35 3.6
CU928171_525(CU928171|pid:none) Kluyveromyces thermotolerans str... 35 3.6
AM452165_1(AM452165|pid:none) Vitis vinifera contig VV78X185891.... 30 4.4
AB016871_5(AB016871|pid:none) Arabidopsis thaliana genomic DNA, ... 31 4.5
(P87312) RecName: Full=Pre-mRNA-splicing factor clf1; AltName: F... 34 4.7
EU637021_16(EU637021|pid:none) Philodina roseola hypothetical pr... 34 6.1
AM444036_1(AM444036|pid:none) Vitis vinifera contig VV78X078254.... 33 8.0
CU633867_95(CU633867|pid:none) Podospora anserina genomic DNA ch... 33 8.0
AM920437_805(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 30 9.3
>FM992689_205(FM992689|pid:none) Candida dubliniensis CD36 chromosome
2, complete sequence.
Length = 1715
Score = 98.6 bits (244), Expect = 2e-19
Identities = 48/87 (55%), Positives = 64/87 (73%)
Frame = +1
Query: 1 GTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIPTQVLEQRNIWIAMYNLENLYGT 180
G PNSS +W+ +MS+ L LSE++KAREIGERA+K I + E+ NIWIA+ NLEN +GT
Sbjct: 1453 GNPNSSILWMNYMSFQLQLSEVDKAREIGERALKTINYREEQEKLNIWIALLNLENTFGT 1512
Query: 181 PDSLLKLFQRSIQYQDPKTMYLTIINI 261
+SL F++SIQY D TM+ +INI
Sbjct: 1513 DESLEDTFKKSIQYMDSFTMHEKLINI 1539
Score = 68.6 bits (166), Expect = 2e-10
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 305 PKKKQFKVINKFAQLEYKLGVIERGRPIFEGLVSNYPNGPDIWNISLGMEFR--DXXXXX 478
PK++ ++ KFAQLE++ G E+GR +FEGLV++ P D+WN+ + E +
Sbjct: 1595 PKREHIDLVKKFAQLEFQKGDPEQGRSLFEGLVADAPKRIDLWNVYIDQEIKQDSKNSEE 1654
Query: 479 XXXXXXXXIGMLFNRPIALKVSDRNIKQFFKRFLQFEKEFGSNFPPNEVKKLAFKFVESN 658
+ LF R ++ K++ + K FF ++L +E++ VK A ++V++N
Sbjct: 1655 DDTNIKSKVEDLFERVLSKKITRKQAKFFFNKWLNYEEDKQDENMIARVKSKAAEYVQNN 1714
Query: 659 N 661
+
Sbjct: 1715 S 1715
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,135,845,744
Number of extensions: 21107196
Number of successful extensions: 48590
Number of sequences better than 10.0: 47
Number of HSP's gapped: 48541
Number of HSP's successfully gapped: 87
Length of query: 263
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 137
Effective length of database: 637,226,869
Effective search space: 87300081053
Effective search space used: 87300081053
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Dictyostelium discoideum cDNA Project Home