Dictyostelium discoideum cDNA Contig-U09284-1

Assembled

Chromosomal Location of Contig-U09284-1

Sequence Contig-U09284-1

GGTACACCAA ATTCTTCTTA TATTTGGATT AAATTCATGT CTTATTATCT
TGGATTAAGT GAAATTAATA AAGCTAGAGA AATCGGTGAA CGTGCAATTA
AAAAGATTAT ACCAACTCAA GTATTGGAAC AAAGAAATAT TTGGATTGCA
ATGTACAATC TTGAAAATCT TTATGGTACA CCAGATTCAT TGTTAAAATT
ATTCCAACGT TCAATTCAAT ATCAAGATCC AAAAACAATG TATCTCACAA
TCATTAACAT TTTGGAAAAC ACTGGTA--- -------TCG TGCCCTTGGA
TTTTCCAAAA AAGAAACAAT TTAAAGTCAT TAATAAATTT GCTCAATTGG
AATATAAATT GGGTGTTATC GAAAGAGGTC GTCCCATTTT CGAGGGTTTG
GTTTCAAATT ATCCAAATGG ACCCGATATT TGGAATATCT CCTTGGGTAT
GGAATTCCGT GATAAAGAAT CCCTCAAATC AAGTAAAGAA TTAAAGGAAA
AAATTGGAAT GCTTTTCAAT CGTCCCATCG CTTTGAAAGT TTCTGATAGA
AATATTAAAC AATTCTTTAA AAGATTCTTA CAATTTGAAA AAGAATTTGG
TTCAAATTTC CCTCCAAATG AAGTTAAAAA ATTGGCTTTT AAATTTGTTG
AATCAAATAA TTATTAAAAT AATNANTTNN TNNNTNNNNT TTTTTTCCTC
CTAATAATAA AATATTAAAT AAAAATTTTT TTTAGAAATT AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA

Translated Amino Acid Sequence Contig-U09284-1

GTPNSSYIWIKFMSYYLGLSEINKAREIGERAIKKIIPTQVLEQRNIWIAMYNLENLYGT
PDSLLKLFQRSIQYQDPKTMYLTIINILENTG---

---VPLDFPKKKQFKVINKFAQLEYKLGVIERGRPIFEGLVSNYPNGPDIWNISLGMEFR
DKESLKSSKELKEKIGMLFNRPIALKVSDRNIKQFFKRFLQFEKEFGSNFPPNEVKKLAF
KFVESNNY*nnxxxxxxfflliiky*ikiffrn*kkkkkkkkkkkkkkkk

Homology Contig-U09284-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09284-1 (Contig-U09284-1Q) /CSM_Contig/Conti...  1275  0.0
Contig-U02012-1 (Contig-U02012-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U09398-1 (Contig-U09398-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11942-1 (Contig-U11942-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U11282-1 (Contig-U11282-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U09665-1 (Contig-U09665-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U14770-1 (Contig-U14770-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U14191-1 (Contig-U14191-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U13063-1 (Contig-U13063-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...    36  0.056

Homology Contig-U09284-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C25617) Dictyostelium discoideum slug cDNA, clone SSA284.        765   0.0    1
(AU075117) Dictyostelium discoideum slug cDNA, clone SSA284.      476   e-130  1
(AR549920) Sequence 5051 from patent US 6747137.                   58   1e-09  3
(BZ400435) EINBP44TF EI_10_12_KB Entamoeba invadens genomic ...    52   0.035  1
(L76303) Borrelia burgdorferi ftsA gene, 3' end of cds, ftsZ...    44   0.052  3
(AC194568) Pan troglodytes BAC clone CH251-57L13 from chromo...    38   0.083  3
(AC211087) Solanum lycopersicum chromosome 6 clone C06SLm013...    34   0.084  2
(AC211059) Solanum lycopersicum chromosome 6 clone C06HBa017...    34   0.086  2
(CP001205) Borrelia burgdorferi ZS7, complete genome.              44   0.13   13
(AM443855) Vitis vinifera contig VV78X170858.6, whole genome...    50   0.14   1

Homology Contig-U09284-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


FM992689_205(FM992689|pid:none) Candida dubliniensis CD36 chromo...    99   2e-19
CP000498_279(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    96   1e-18
CR382139_147(CR382139|pid:none) Debaryomyces hansenii strain CBS...    95   2e-18
AP002040_8(AP002040|pid:none) Arabidopsis thaliana genomic DNA, ...    94   4e-18
AC016795_26(AC016795|pid:none) Arabidopsis thaliana chromosome I...    94   4e-18
AP004273_12(AP004273|pid:none) Oryza sativa Japonica Group genom...    94   7e-18
AP008213_471(AP008213|pid:none) Oryza sativa (japonica cultivar-...    94   7e-18
CR812943_5(CR812943|pid:none) Zebrafish DNA sequence from clone ...    92   2e-17
BC095720_1(BC095720|pid:none) Danio rerio programmed cell death ...    92   2e-17
CR380959_209(CR380959|pid:none) Candida glabrata strain CBS138 c...    92   2e-17