Homology Contig-U09227-1 vs Protein
Query= Contig-U09227-1 (Contig-U09227-1Q) /CSM_Contig/Contig-U09227-1Q.Seq.d
(1017 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR382139_793(CR382139|pid:none) Debaryomyces hansenii strain CBS... 36 1.9
AC116979_19(AC116979|pid:none) Dictyostelium discoideum chromoso... 35 5.4
CP000414_741(CP000414|pid:none) Leuconostoc mesenteroides subsp.... 35 5.4
AM260522_1311(AM260522|pid:none) Helicobacter acinonychis str. S... 34 7.1
CP001173_106(CP001173|pid:none) Helicobacter pylori G27, complet... 34 7.1
CP001217_124(CP001217|pid:none) Helicobacter pylori P12, complet... 34 7.1
(P55973) RecName: Full=Translation initiation factor IF-3; &AE0... 34 7.1
CP000241_124(CP000241|pid:none) Helicobacter pylori HPAG1, compl... 34 7.1
(Q89AZ9) RecName: Full=Flagellar motor switch protein FliG; &AE... 34 9.2
>CR382139_793(CR382139|pid:none) Debaryomyces hansenii strain CBS767
chromosome G complete sequence.
Length = 1926
Score = 36.2 bits (82), Expect = 1.9
Identities = 16/28 (57%), Positives = 23/28 (82%)
Frame = +1
Query: 511 EKKLKDAKKRQAEIMAKFAKQQTQFLQN 594
E+K + AK+RQ+++MAKF KQQ+ FL N
Sbjct: 1181 ERKKRVAKERQSKLMAKFKKQQSSFLLN 1208
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 895,264,596
Number of extensions: 13010251
Number of successful extensions: 45291
Number of sequences better than 10.0: 9
Number of HSP's gapped: 44330
Number of HSP's successfully gapped: 9
Length of query: 339
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 210
Effective length of database: 627,614,014
Effective search space: 131798942940
Effective search space used: 131798942940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
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