Dictyostelium discoideum cDNA Contig-U09227-1

Assembled

Chromosomal Location of Contig-U09227-1

NO HIT FOUND.

Sequence Contig-U09227-1

ATTAAATTAA AATCATCATC GTCATCATCA ACAACAACAA CAACAGAATT
AATAAAAACT GAAATACCAT GGACAATTTT AGATCAACCA TTAAATTCAT
TTTCAACTTA TGGTGATGCA ATTTTATGTA TACTTCAAAA GTTTAATTTC
TTTGGTATTG GTAGATCAAC ATTAGATGTT TTGTTAGAGT ATTATCAAGA
ATCTTATACC AATAATATTT ATTTAGATAA AAAGGAATAC ATTGATAAAT
GTTTATCAAT ACTTTATAAT ATTGATGAAT CTATAGCAAA AAGAATAAAA
ACAAGATCAC CAACTTTTTC ACCAATTAAA AATTTATCAC TAAATAGTGA
TGGTAGCGTC ATTTCTTCAA ATGATGATAA TAGTAACAGC AACAACAACA
ACAACAACAA CAACAACAGC AATAATAATG GTGGTAATCA AAATAATAAT
CAAAATAATA ATAGCAATGA AGATGATGGT GATGAAAATA ATAGTGGTAA
ACGTGATAAT GAAAAGAAAT TAAAGGATGC AAAGAAACGT CAAGCTGAAA
TTATGGCAAA ATTTGCAAAA CAACAAACTC AATTCCTTCA AAATGTAGAT
GATTTAG--- -------ATA ATAATAATAA TAATAATAAT AGTAATAGTA
ATAATAATAA TATTAGTGGT AGCAATGGTT TAACAAATAG TAATGGTATT
GGAAGTAGTA GTAATAGTGT TAACAATAGT CCAAATTTTG GTGGTAATGC
CAATAATCTA TCTATTTGGG TCGATTCATT AAAAAAGAGA TTAAAAGATT
TAGTAGTCAT TGAACCAAGA AGTAAACTAT TTTTCTCTGA TTGGTTATCA
ACTTTAATAC CTTCAATGAT TGAAGGTATT ACACCATGGG TACTTTATCA
AATTGTTTCA AAAAATATTG AATTTTTAGA ATTAGCTTCA AGATTAGTTG
AATTATCACC ATCATCATCA TAAAATAATA ATAATAATAA TAATAATAAT
AATAATAATA ATAATAA

Translated Amino Acid Sequence Contig-U09227-1

IKLKSSSSSSTTTTTELIKTEIPWTILDQPLNSFSTYGDAILCILQKFNFFGIGRSTLDV
LLEYYQESYTNNIYLDKKEYIDKCLSILYNIDESIAKRIKTRSPTFSPIKNLSLNSDGSV
ISSNDDNSNSNNNNNNNNNSNNNGGNQNNNQNNNSNEDDGDENNSGKRDNEKKLKDAKKR
QAEIMAKFAKQQTQFLQNVDDL---

---NNNNNNNSNSNNNNISGSNGLTNSNGIGSSSNSVNNSPNFGGNANNLSIWVDSLKKR
LKDLVVIEPRSKLFFSDWLSTLIPSMIEGITPWVLYQIVSKNIEFLELASRLVELSPSSS
*nnnnnnnnnnnnnn

Homology Contig-U09227-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09227-1 (Contig-U09227-1Q) /CSM_Contig/Conti...   682  0.0
Contig-U14844-1 (Contig-U14844-1Q) /CSM_Contig/Conti...    46  7e-05
Contig-U12461-1 (Contig-U12461-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U11154-1 (Contig-U11154-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10752-1 (Contig-U10752-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U10201-1 (Contig-U10201-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U08914-1 (Contig-U08914-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U04400-1 (Contig-U04400-1Q) /CSM_Contig/Conti...    38  0.018
Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Conti...    38  0.018

Homology Contig-U09227-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU062116) Dictyostelium discoideum slug cDNA, clone SLH662.      682   0.0    3
(AU039373) Dictyostelium discoideum slug cDNA, clone SLH662.      609   e-170  1
(GR578225) CBZY1129.b1 CBZY Dictyostelium purpureum 18 hr st...    64   1e-05  1
(GR583342) CCAA1558.b1 CCAA Dictyostelium purpureum 0 hr sta...    34   0.005  3
(AC102505) Mus musculus chromosome 1, clone RP24-73K7, compl...    52   0.045  1
(FE955671) Aaem03313 Antheraea assama 96 hours embryo cDNA l...    32   0.075  4
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.100  19
(FN357483) Schistosoma mansoni genome sequence supercontig S...    38   0.10   12
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    34   0.11   20
(FP085581) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.14   5

Homology Contig-U09227-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CR382139_793(CR382139|pid:none) Debaryomyces hansenii strain CBS...    36   1.9
AC116979_19(AC116979|pid:none) Dictyostelium discoideum chromoso...    35   5.4
CP000414_741(CP000414|pid:none) Leuconostoc mesenteroides subsp....    35   5.4
AM260522_1311(AM260522|pid:none) Helicobacter acinonychis str. S...    34   7.1
CP001173_106(CP001173|pid:none) Helicobacter pylori G27, complet...    34   7.1
CP001217_124(CP001217|pid:none) Helicobacter pylori P12, complet...    34   7.1
(P55973) RecName: Full=Translation initiation factor IF-3;  &AE0...    34   7.1
CP000241_124(CP000241|pid:none) Helicobacter pylori HPAG1, compl...    34   7.1
(Q89AZ9) RecName: Full=Flagellar motor switch protein FliG;  &AE...    34   9.2