Dictyostelium discoideum cDNA Contig-U09131-1

Assembled

Chromosomal Location of Contig-U09131-1

Sequence Contig-U09131-1

AAAATTTTAG AAAAAAAACA AAAAAAAAAA AAAAAGACCA ATAATAATAA
GTAATAAGTA ATATAATAAT GGTAGCAGGA GAAATAATAA AAGGTGTTGC
AGCCGAAATA ACAAACGGTT CATCATCATC AGTTGTTCAA AAATATCTTG
ATTGTGCAAA TCAAGTAGCA CCAGATCCAG GTAATACAAC ATGGGTTTTA
CTTTCAACTA TTTTAGTATT AGGTATGATG CCTGCACTCG CATTCTTTGA
AGCAGGTCTC TTAAGAAGTA AAAATACACT TTCAATTATC ACACAAATTA
TGTCTGGTAT TGTAGTTTTA ACTGTCATGT GGCAAGCATT TGGTTATTCA
TTAACTTTTG GCCCAGATCA AAAAGGTATT ATTGGTAATT TAGATCATGC
ATTTTTAATT AATGTTTCAT ATGACGATTG TTCACCAAAT GCACCAAATA
TTCCAGCAGC AGCTTAAGAA NNATTTATGA TGATGTTTGC AAATATTACA
CCATTATTGA TGACTGGTGC ATTCGCAGAA AGAGTTAAAT TCAAAGCATT
CATCGCACTC ACCGTTGCTT GG-------- --CCATCAAA TTTACCATTA
GCAACAATTG GAGCAGCATT ATTATGGATG GGTTGGTTTG GTTTTAATGC
AGGTAGTGCA TTAGCAGCAG GTAATATTGC AACATCAGCA GTAGCAAGCA
CACAAATTGG TGGTAGTTTT TCAGCTATTG TTTGGATCAT CCTTTCTGCC
GCCAAAGGAA AACCAAATAC TGTATCGGTT ATCAATGGTG TTATTGCAGG
TTTAGCAGGT ATCACACCAG CATCTGGTTA TATCAATAGT CAATATTCAA
TTGGGTTGGG TATTTGTTTA GGTTTAGCTT CTTACTATTC CGTTGTATTA
TTAAAACATA AACTTCACAT CGATGATGCT TTAGACGTTA GCTCTGTACA
TGGTTTAACT GGTATTATTG GTTCATTGGC AATTGGTTTC TGTGCTGAAC
TCTCTGTTAA TCCAAATGGT GCAAATGGTG CTTTCTATGG TAATCCAAAA
TTAATTGGTA CTCAATTACT CGGTGTCGTT TCTGTCGCTG TTTGGGCTGC
CGCTTGGACT TGGGTCCTCT TAAAGATTAT CGATGCCACT ATCGGTGTTA
AAATCGATGA ATCTGAAGAA GCAATTAGGT CTCGATCTCG TCGAACATGG
TGAATTACGC CTTATACATA ATATCTACAC TGATCCAAGC GTAATGAAAA
TCATTGAGNT GCATGCTGTT ATTAATAGTC ATGATTCCCC CCCCCCGGCG
GGTAAATAAA TAAATAAATA AATTAAATTA TAATAATAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAA

Translated Amino Acid Sequence Contig-U09131-1

nfrkktkkkkkdq***visniimvageiikgvaaeitngssssvvqkyldcanqvapdpg
nttwvllstilvlgmmpalaffeagllrskntlsiitqimsgivvltvmwqafgysltfg
pdqkgiignldhaflinvsyddcspnapnipaaa*EXFMMMFANITPLLMTGAFAERVKF
KAFIALTVAW---

---PSNLPLATIGAALLWMGWFGFNAGSALAAGNIATSAVASTQIGGSFSAIVWIILSAA
KGKPNTVSVINGVIAGLAGITPASGYINSQYSIGLGICLGLASYYSVVLLKHKLHIDDAL
DVSSVHGLTGIIGSLAIGFCAELSVNPNGANGAFYGNPKLIGTQLLGVVSVAVWAAAWTW
VLLKIIDATIGVKIDESEEAIRSRSRRTW*itpyt*ylh*skrnenh*xaccy**s*fpp
pgg*ink*in*iiiikkkkkkkkkkkkkkkkkkkkkk

Homology Contig-U09131-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09131-1 (Contig-U09131-1Q) /CSM_Contig/Conti...  2375  0.0
Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Conti...    54  4e-07
Contig-U12089-1 (Contig-U12089-1Q) /CSM_Contig/Conti...    52  2e-06
Contig-U12207-1 (Contig-U12207-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U04456-1 (Contig-U04456-1Q) /CSM_Contig/Conti...    50  7e-06
Contig-U12956-1 (Contig-U12956-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U09764-1 (Contig-U09764-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U09074-1 (Contig-U09074-1Q) /CSM_Contig/Conti...    48  3e-05
Contig-U05635-1 (Contig-U05635-1Q) /CSM_Contig/Conti...    48  3e-05

Homology Contig-U09131-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(FB719428) Sequence 903 from Patent WO2007137973.                1168   0.0    4
(AF510716) Dictyostelium discoideum ammonium transport prote...  1168   0.0    4
(AB049067) Dictyostelium discoideum gene for ammonium transp...  1168   0.0    4
(C89840) Dictyostelium discoideum slug cDNA, clone SSG223.       1168   0.0    4
(BJ346759) Dictyostelium discoideum cDNA clone:dda24n24, 3' ...  1168   0.0    2
(BJ433959) Dictyostelium discoideum cDNA clone:ddv23p12, 3' ...  1047   0.0    3
(AU033771) Dictyostelium discoideum slug cDNA, clone SLB420.     1007   0.0    4
(BJ434193) Dictyostelium discoideum cDNA clone:ddv16m01, 3' ...  1003   0.0    1
(AU060769) Dictyostelium discoideum slug cDNA, clone SLB420.      940   0.0    1
(AU270335) Dictyostelium discoideum vegetative cDNA clone:VS...   880   0.0    1

Homology Contig-U09131-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CP000866_584(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c...   187   8e-46
AP009049_2979(AP009049|pid:none) Clostridium kluyveri NBRC 12016...   152   5e-36
AP009389_664(AP009389|pid:none) Pelotomaculum thermopropionicum ...   151   1e-35
A69372(A69372) ammonium transporter (amt-1) homolog - Archaeoglo...   149   2e-34
CP001130_931(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...   149   2e-34
AJ965256_878(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple...   148   4e-34
CP000688_942(CP000688|pid:none) Dehalococcoides sp. BAV1, comple...   147   7e-34
CP000859_565(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...   147   9e-34
CP000679_1281(CP000679|pid:none) Caldicellulosiruptor saccharoly...   146   2e-33
CP001393_1979(CP001393|pid:none) Anaerocellum thermophilum DSM 6...   146   2e-33