Homology Contig-U09131-1 vs DNA
Query= Contig-U09131-1 (Contig-U09131-1Q) /CSM_Contig/Contig-U09131-1Q.Seq.d
(1406 letters)
Database: ddbj_A
108,600,042 sequences; 106,710,029,556 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(FB719428) Sequence 903 from Patent WO2007137973. 1168 0.0 4
(AF510716) Dictyostelium discoideum ammonium transport prote... 1168 0.0 4
(AB049067) Dictyostelium discoideum gene for ammonium transp... 1168 0.0 4
(C89840) Dictyostelium discoideum slug cDNA, clone SSG223. 1168 0.0 4
(BJ346759) Dictyostelium discoideum cDNA clone:dda24n24, 3' ... 1168 0.0 2
(BJ433959) Dictyostelium discoideum cDNA clone:ddv23p12, 3' ... 1047 0.0 3
(AU033771) Dictyostelium discoideum slug cDNA, clone SLB420. 1007 0.0 4
(BJ434193) Dictyostelium discoideum cDNA clone:ddv16m01, 3' ... 1003 0.0 1
(AU060769) Dictyostelium discoideum slug cDNA, clone SLB420. 940 0.0 1
(AU270335) Dictyostelium discoideum vegetative cDNA clone:VS... 880 0.0 1
(AU037775) Dictyostelium discoideum slug cDNA, clone SSE279. 779 0.0 4
(AU038079) Dictyostelium discoideum slug cDNA, clone SSH245. 765 0.0 4
(AU039389) Dictyostelium discoideum slug cDNA, clone SLH689. 747 0.0 4
(BJ343660) Dictyostelium discoideum cDNA clone:dda16c24, 3' ... 817 0.0 1
(C25665) Dictyostelium discoideum slug cDNA, clone SSB126. 617 0.0 4
(AU037118) Dictyostelium discoideum slug cDNA, clone SSB490. 400 0.0 4
(AU037214) Dictyostelium discoideum slug cDNA, clone SSB619. 531 e-170 4
(C90781) Dictyostelium discoideum slug cDNA, clone SSJ140. 381 e-115 4
(GR584270) CCAA2297.b1 CCAA Dictyostelium purpureum 0 hr sta... 311 e-103 2
(GR585531) CCAA622.b1 CCAA Dictyostelium purpureum 0 hr star... 311 e-103 2
(GR583764) CCAA1891.b1 CCAA Dictyostelium purpureum 0 hr sta... 311 3e-92 2
(AU039881) Dictyostelium discoideum slug cDNA, clone SLG650. 244 9e-84 4
(AU038706) Dictyostelium discoideum slug cDNA, clone SSL373. 202 5e-72 4
(AU075034) Dictyostelium discoideum slug cDNA, clone SSM779. 163 3e-60 4
(GR583765) CCAA1891.g1 CCAA Dictyostelium purpureum 0 hr sta... 78 2e-51 7
(GR585532) CCAA622.g1 CCAA Dictyostelium purpureum 0 hr star... 78 3e-51 7
(GR584271) CCAA2297.g1 CCAA Dictyostelium purpureum 0 hr sta... 78 7e-50 7
(FE245270) CAPG8756.fwd CAPG Naegleria gruberi amoeba stage ... 50 9e-11 4
(EK240881) 1095460224810 Global-Ocean-Sampling_GS-31-01-01-1... 56 3e-04 2
(EJ801749) 1093017432738 Global-Ocean-Sampling_GS-30-02-01-1... 56 0.004 1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 56 0.004 1
(CP000083) Colwellia psychrerythraea 34H, complete genome. 56 0.004 1
(FE245269) CAPG8756.rev CAPG Naegleria gruberi amoeba stage ... 40 0.018 3
(EK299438) 1095462359335 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.050 2
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 52 0.062 1
(CP000082) Psychrobacter arcticus 273-4, complete genome. 52 0.062 1
(AC160698) Bos taurus clone CH240-94H17, WORKING DRAFT SEQUE... 50 0.25 1
(EK316259) 1095462414008 Global-Ocean-Sampling_GS-31-01-01-1... 50 0.25 1
(EJ162271) 1092344052727 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.25 1
(EJ487734) 1095403515060 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.34 2
(DX997084) CHORI103-50N7.TV.2 CHORI103 Schistosoma mansoni g... 44 0.34 2
(ER624630) 1093017556490 Global-Ocean-Sampling_GS-36-01-01-2... 48 0.36 2
(ER445980) 1092963829193 Global-Ocean-Sampling_GS-35-01-01-1... 44 0.37 2
(EJ690764) 1092956002661 Global-Ocean-Sampling_GS-30-02-01-1... 34 0.69 2
(EJ692676) 1092956008426 Global-Ocean-Sampling_GS-30-02-01-1... 34 0.69 2
(EJ051844) 1095456003006 Global-Ocean-Sampling_GS-26-01-01-1... 34 0.69 2
(EJ005866) 1091138294559 Global-Ocean-Sampling_GS-26-01-01-1... 34 0.69 2
(EJ004643) 1091138183946 Global-Ocean-Sampling_GS-26-01-01-1... 34 0.69 2
(EJ006895) 1091139282988 Global-Ocean-Sampling_GS-26-01-01-1... 34 0.69 2
(EJ964489) 1093022030906 Global-Ocean-Sampling_GS-30-02-01-1... 34 0.69 2
(ER580446) 1093015834426 Global-Ocean-Sampling_GS-36-01-01-2... 36 0.69 2
(EJ004038) 1091121266286 Global-Ocean-Sampling_GS-26-01-01-1... 34 0.69 2
(ER605246) 1093016272552 Global-Ocean-Sampling_GS-36-01-01-2... 36 0.70 2
(BV282822) S232P6488FD1.T0 Beagle Canis familiaris STS genom... 48 0.97 1
(CU468229) M.truncatula DNA sequence from clone MTH2-170M20 ... 48 0.97 1
(GC701944) Sequence 17189 from patent US 6812339. 48 0.97 1
(AF124534) Homo sapiens P63 protein (P63) gene, exons 7, 8, ... 48 0.97 1
(AF116763) Homo sapiens p51 gene, exon 8. 48 0.97 1
(AC063939) Homo sapiens 3 BAC RP11-373I6 (Roswell Park Cance... 48 0.97 1
(AC225500) Medicago truncatula clone mth2-52p14, WORKING DRA... 48 0.97 1
(AC225499) Medicago truncatula clone mth2-50o16, WORKING DRA... 48 0.97 1
(ER395386) 1095344006421 Global-Ocean-Sampling_GS-34-01-01-1... 48 0.97 1
(EK435116) 1095521028447 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1
(EK076561) 1092961046008 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.97 1
(EJ770911) 1092966607850 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.97 1
(EJ740178) 1092962011860 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.97 1
(EJ406079) 1093012093837 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.97 1
(EJ357659) 1092963667333 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.97 1
(BF087915) IL3-HT0619-080900-249-H10 HT0619 Homo sapiens cDN... 48 0.97 1
(CP000931) Shewanella halifaxensis HAW-EB4, complete genome. 48 0.97 1
(CP000419) Streptococcus thermophilus LMD-9, complete genome. 48 0.97 1
(CP000024) Streptococcus thermophilus CNRZ1066, complete gen... 48 0.97 1
(CP000023) Streptococcus thermophilus LMG 18311, complete ge... 48 0.97 1
(AB209344) Homo sapiens mRNA for ADP-ribosylation factor 7 v... 38 1.8 2
(BH417741) MuSite01-074 MuTAIL-PCR product Zea mays genomic ... 44 2.3 2
(ER475362) 1092963998128 Global-Ocean-Sampling_GS-35-01-01-1... 40 3.6 2
(DY887808) CeleSEQ4512 Cunninghamella elegans pBluescript (E... 34 3.7 3
(AR376927) Sequence 1933 from patent US 6605709. 46 3.8 1
(U56960) Caenorhabditis elegans cosmid F25H10, complete sequ... 46 3.8 1
(CR855368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 3.8 1
(AC223779) Bos taurus clone CH240-457N10, WORKING DRAFT SEQU... 46 3.8 1
(AC223578) Bos taurus clone CH240-465G15, WORKING DRAFT SEQU... 46 3.8 1
(GS102973) SIC_Ba0135B17.R SIC_Ba Setaria italica genomic 3'... 46 3.8 1
(GS038777) SIC_Ba0093G04.F SIC_Ba Setaria italica genomic 5'... 46 3.8 1
(ER631625) 1093018464501 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.8 1
(EK546054) 1095516088346 Global-Ocean-Sampling_GS-32-01-01-1... 46 3.8 1
(EJ931096) 1093018807230 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.8 1
(EJ926100) 1093018782510 Global-Ocean-Sampling_GS-30-02-01-1... 46 3.8 1
(EG572318) AGENCOURT_89900073 NICHD_XGC_int_m Xenopus laevis... 46 3.8 1
(CP001103) Alteromonas macleodii 'Deep ecotype', complete ge... 46 3.8 1
(CP000786) Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 46 3.8 1
(CP000777) Leptospira biflexa serovar Patoc strain 'Patoc 1 ... 46 3.8 1
(AM942759) Proteus mirabilis strain HI4320, complete genome. 46 3.8 1
(AC234303) Homo sapiens FOSMID clone ABC12-49094300M8 from c... 38 4.7 3
(EK176806) 1095458101365 Global-Ocean-Sampling_GS-31-01-01-1... 38 5.0 2
(ER578649) 1093015824441 Global-Ocean-Sampling_GS-36-01-01-2... 38 5.4 2
(AC079079) Homo sapiens chromosome 6 clone RP11-106M1, WORKI... 42 5.5 5
(EK422063) 1095515517239 Global-Ocean-Sampling_GS-31-01-01-1... 32 9.6 2
>(FB719428) Sequence 903 from Patent WO2007137973.
Length = 1473
Score = 1168 bits (589), Expect(4) = 0.0
Identities = 589/589 (100%)
Strand = Plus / Plus
Query: 583 ccatcaaatttaccattagcaacaattggagcagcattattatggatgggttggtttggt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ccatcaaatttaccattagcaacaattggagcagcattattatggatgggttggtttggt 786
Query: 643 tttaatgcaggtagtgcattagcagcaggtaatattgcaacatcagcagtagcaagcaca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tttaatgcaggtagtgcattagcagcaggtaatattgcaacatcagcagtagcaagcaca 846
Query: 703 caaattggtggtagtttttcagctattgtttggatcatcctttctgccgccaaaggaaaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 caaattggtggtagtttttcagctattgtttggatcatcctttctgccgccaaaggaaaa 906
Query: 763 ccaaatactgtatcggttatcaatggtgttattgcaggtttagcaggtatcacaccagca 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ccaaatactgtatcggttatcaatggtgttattgcaggtttagcaggtatcacaccagca 966
Query: 823 tctggttatatcaatagtcaatattcaattgggttgggtatttgtttaggtttagcttct 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 tctggttatatcaatagtcaatattcaattgggttgggtatttgtttaggtttagcttct 1026
Query: 883 tactattccgttgtattattaaaacataaacttcacatcgatgatgctttagacgttagc 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 tactattccgttgtattattaaaacataaacttcacatcgatgatgctttagacgttagc 1086
Query: 943 tctgtacatggtttaactggtattattggttcattggcaattggtttctgtgctgaactc 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 tctgtacatggtttaactggtattattggttcattggcaattggtttctgtgctgaactc 1146
Query: 1003 tctgttaatccaaatggtgcaaatggtgctttctatggtaatccaaaattaattggtact 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 tctgttaatccaaatggtgcaaatggtgctttctatggtaatccaaaattaattggtact 1206
Query: 1063 caattactcggtgtcgtttctgtcgctgtttgggctgccgcttggacttgggtcctctta 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 caattactcggtgtcgtttctgtcgctgtttgggctgccgcttggacttgggtcctctta 1266
Query: 1123 aagattatcgatgccactatcggtgttaaaatcgatgaatctgaagaag 1171
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 aagattatcgatgccactatcggtgttaaaatcgatgaatctgaagaag 1315
Score = 67.9 bits (34), Expect(4) = 0.0
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1173 aattaggtctcgatctcgtcgaacatggtgaatt 1206
||||||||||||||||||||||||||||||||||
Sbjct: 1316 aattaggtctcgatctcgtcgaacatggtgaatt 1349
Score = 42.1 bits (21), Expect(4) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1266 ctgttattaatagtcatgatt 1286
|||||||||||||||||||||
Sbjct: 1397 ctgttattaatagtcatgatt 1417
Score = 30.2 bits (15), Expect(4) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1241 gtaatgaaaatcatt 1255
|||||||||||||||
Sbjct: 1376 gtaatgaaaatcatt 1390
Score = 916 bits (462), Expect = 0.0
Identities = 475/480 (98%)
Strand = Plus / Plus
Query: 91 aaggtgttgcagccgaaataacaaacggttcatcatcatcagttgttcaaaaatatcttg 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 aaggtgttgcagccgaaataacaaacggttcatcatcatcagttgttcaaaaatatcttg 118
Query: 151 attgtgcaaatcaagtagcaccagatccaggtaatacaacatgggttttactttcaacta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 attgtgcaaatcaagtagcaccagatccaggtaatacaacatgggttttactttcaacta 178
Query: 211 ttttagtattaggtatgatgcctgcactcgcattctttgaagcaggtctcttaagaagta 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ttttagtattaggtatgatgcctgcactcgcattctttgaagcaggtctcttaagaagta 238
Query: 271 aaaatacactttcaattatcacacaaattatgtctggtattgtagttttaactgtcatgt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaaatacactttcaattatcacacaaattatgtctggtattgtagttttaactgtcatgt 298
Query: 331 ggcaagcatttggttattcattaacttttggcccagatcaaaaaggtattattggtaatt 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggcaagcatttggttattcattaacttttggcccagatcaaaaaggtattattggtaatt 358
Query: 391 tagatcatgcatttttaattaatgtttcatatgacgattgttcaccaaatgcaccaaata 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tagatcatgcatttttaattaatgtttcatatgacgattgttcaccaaatgcaccaaata 418
Query: 451 ttccagcagcagcttaagaannatttatgatgatgtttgcaaatattacaccattattga 510
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||
Sbjct: 419 ttccagcagcagcttatgcattctttatgatgatgtttgcaaatattacaccattattga 478
Query: 511 tgactggtgcattcgcagaaagagttaaattcaaagcattcatcgcactcaccgttgctt 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgactggtgcattcgcagaaagagttaaattcaaagcattcatcgcactcaccgttgctt 538
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 108600042
Number of Hits to DB: 1,373,538,570
Number of extensions: 79377364
Number of successful extensions: 5874374
Number of sequences better than 10.0: 100
Length of query: 1406
Length of database: 106,710,029,556
Length adjustment: 24
Effective length of query: 1382
Effective length of database: 104,103,628,548
Effective search space: 143871214653336
Effective search space used: 143871214653336
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home