<Clone: Contig-U09122-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U09122-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U09122-1

< more Chromosomal info >

Chromosome Number 5
Length 5062330
Start Poin 3,489,974
End Point 3,488,919
Strand MINUS

Sequence Contig-U09122-1

AAAAAAATAA AAATAAAAAA TCTAAAAAAA TGGGATTATT TGGTAAAATT
TTTAAAAAGA AAACAAATGG TGAAAAAGAA GAAAATTTTA ATGATGATGA
TAAAGATTTA AGTAAAATTA AACAAGAAAG TTCAAAAGAT TTAAGTAAAA
TTAAACAAGG TAGTTCAAAA GATTTAGGTA AAATTAAACA AGGTAGTTCA
AAAGATTTAA GTAAAATTAA ACAAGGTAGT TCAAAAGATT TATCATCACA
ATCAATTTAT ATAGATAGTG AAGAGATTAT ATTGAATAAT ATTGTGATTG
ATAATTTCTT TTTATTAGAT AATAGTGTAA GATTCAATGT ATTCAATGAA
TCACATTGTG ATGATAAATC AAATATATTT TATAAAGTAT GGAGAACTCA
AGCTATAATT CAAGTGATTT TCAAACATTA TGTAATTAAA TCAATTCCAA
CTCAAAGTAC AGTGATCACA ATAACAGATT TATTCAATAA GAAGCTAACT
ACAGGTTTCA TACCAGACAC TACTAAATCC GTTACATTTG GTAGAAAATT
CAATCAGAGT TTAGAGGTT- ---------A CGATAATCAA TTGCCACCGG
GGGATAGTAT ACCAGAGTCA GTTGCTTCAT TAACATTTGG TGACTCAGTC
AATCAACCTT TATCACCTGG TTTAATTGGT AATTCAGTTG GTATGTTAGT
ATTTGGTGAA GCATTTAATC AAATCATTTC ACCAGGTTGT TTACCAGATT
GTGTTAATAT TTTAGAATTT TCAAATTATA ATAAACCATT TGTTTATGGT
GCACTTCCAA ATTCAATCAT TTATTTAGAT CTTGGAAAAA GTTATAATTT
ACCTTTATCA AATTTACCAG AGAATTTAAG ATCACTAAAA CTTGGTCGTT
CATTTAAACA ACAATTAACA ATGGATACTT TACCACCTTC AATAACTGAA
ATTTATTTAG TTCCAAATTT TGATAAAACT TTAATTTCTT ATGATATTCC
AAAACATATT TTAAAAGTTA ATGAAAAAAA TTAATAAAAA AAAAAAAAAT
AAAAAAATAA TCAA

Translated Amino Acid Sequence Contig-U09122-1

<All Frames> 
KNKNKKSKKMGLFGKIFKKKTNGEKEENFNDDDKDLSKIKQESSKDLSKIKQGSSKDLGK
IKQGSSKDLSKIKQGSSKDLSSQSIYIDSEEIILNNIVIDNFFLLDNSVRFNVFNESHCD
DKSNIFYKVWRTQAIIQVIFKHYVIKSIPTQSTVITITDLFNKKLTTGFIPDTTKSVTFG
RKFNQSLEV---

---DNQLPPGDSIPESVASLTFGDSVNQPLSPGLIGNSVGMLVFGEAFNQIISPGCLPDC
VNILEFSNYNKPFVYGALPNSIIYLDLGKSYNLPLSNLPENLRSLKLGRSFKQQLTMDTL
PPSITEIYLVPNFDKTLISYDIPKHILKVNEKN**kkkk*knnq


Homology Contig-U09122-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U09122-1 (Contig-U09122-1Q) /CSM_Contig/Conti...  1800  0.0
Contig-U04730-1 (Contig-U04730-1Q) /CSM_Contig/Conti...    50  5e-06
Contig-U11452-1 (Contig-U11452-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U10453-1 (Contig-U10453-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14472-1 (Contig-U14472-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12308-1 (Contig-U12308-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12247-1 (Contig-U12247-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U11906-1 (Contig-U11906-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U10109-1 (Contig-U10109-1Q) /CSM_Contig/Conti...    36  0.075


Homology Contig-U09122-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(AU033339) Dictyostelium discoideum slug cDNA, clone SLA631.      880   0.0    1
(AU060231) Dictyostelium discoideum slug cDNA, clone SLA631.      813   0.0    1
(C84052) Dictyostelium discoideum slug cDNA, clone SSC558.         50   4e-04  3
(FP091243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.11   2
(AX346398) Sequence 1469 from Patent WO0200928.                    34   0.13   2
(CS374581) Sequence 684 from Patent WO2006034879.                  34   0.13   2
(CS374309) Sequence 412 from Patent WO2006034879.                  34   0.13   2
(AM488350) Vitis vinifera contig VV78X205586.4, whole genome...    46   0.17   2
(GF019286) pRRL2:Newb:20080411:399121 USMARC Pig Breed SNP D...    50   0.19   1
(AM439186) Vitis vinifera contig VV78X185509.6, whole genome...    50   0.19   1


Homology Contig-U09122-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...   103   8e-21
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    92   2e-17
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    92   2e-17
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    92   3e-17
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...    89   3e-16
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    88   4e-16
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            87   1e-15
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    87   1e-15
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    86   3e-15
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740...    84   8e-15


<Clone: Contig-U09122-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Project Home