Dictyostelium discoideum cDNA Contig-U09097-1

Assembled

Chromosomal Location of Contig-U09097-1

Sequence Contig-U09097-1

GAAAAAAGAA AGAAAAGTTT ATATATATAA GACAAAAAAA AATTAAAAAA
AAAAATTAAA AAAAAATAAA AAATAAAAAT AAATATATAT AAAAAAAGAT
CATCTCAAAG AAACACAAAT ACAGAATCTC ACAAACACAC ACAGAATAAC
GCAACTTTCC AGTGTTTTTA ATAAATAAAT AAATAATAAA TATATATAAG
TCAAAGAAAA TGGACTCTAA ATGGTTTTTT ATTGTATTAA TAAGTTTTTT
ATTGGTTCTT CCAAGTATAG TCACACCTTA TAGAAAGAGT GTTGAAATAA
CAAATGAAGA ACCACAAAGA GATATATATC AATTAGAAAA AACTAATAAG
ATGGCAGAAG TAGGAGATTT GGGTGTTGCT TCATTTTTAA ATATTTTAGA
TACCAGCAGT TCTAGTTCAA GCTCAAGCAG TTCTAGTTCA AGCAGTTCTA
GTTCCAGCTC AAGCAGTTCT AGTTCAAGCA GCTCTTCATC AAGCAGTTCA
AGTTCTTCTT CAAGCAGTTC AAGCTCTTCA TCAAGCAGCT CAAGCTCTTC
AAGCAGTTCA TCATCATCAT CATCATCATC ATCATCATCA TCATCATCAA
GCAGCTCAAG CTCATCATCA TCAAGCAGCT CAAGCTCATC ATCATCAAGC
AGCTCAAGCT CAAGCTCATC ATCAAGTAGC TCAAGCTCAA GCTCATCATC
AAGCAGCTCA AGCTCATCAA GCAGCTCATC ATCATCATCA TCAAGCAGCT
CAAGTTCATC ATCTTCAAGC TCTTCATCAA GCTCAAGTAG CTCAAGCTCT
TCATCAAGCT CAAGCAGCTC AAGCTCTTCA TCAAGTTCAA GTAGCTCATC
TAGTTCAAGC TCTTCATCAA GCTCAAGCTC CTCAAGCTCA AGCAGTTCAT
CAAGCTCCTC AAGCTCAAGC AGTTCATCAA GCAGTTCATC AAGCTCCTCA
AGCTCAAGCA GTTCATCAAG CTCCTCAAGC TCAAGCTCTT CATCAAGCTC
AAGCTCAAGC TCAAGCTCCT CATCNAGNCC NNGCTGTTNN TNNAGCAGCN
CTTCANNATC ATCNNCATCT CTCATAGCAC TCGTGGCATC ATNGATCATC
AAGCTCAAGC AGCGCATCAN GTTCAAGCTC AAGCAGT--- -------AAT
GCAATTGAAG AATATGATAA AGCATTAAGA ATTAGAAAAG ATATTAGAGA
TAATGATTTA AGATCAATTG CAGAGATTCA TTATGCAATG GGTTTAGCAT
TCCATGTTGA TAATAAAGCA CCAATCGCTG AGAAACATTA TAGAACTGCC
ATTGATTTAT TGGGTGATCA ATTGAATAAG ATACAACAAT CATTGAATGG
AGAAACTGAT ACTGATAAAT TAAAGAGTTT GGCTGATGAA ATTCAAGAAT
TGAAAAATAT TATCGTTGAT CTTCAAGGTA GATTGGATGA AGTTGTTCCA
ATTGATACCT CAAATGAACC AGTACCAAAA GAACTTCAAC AGGATGAACA
ACAACCAGTT TTCTCAACTT CTGCTAGTCA AAATCCAATT AAACCTGGAA
CTCCAGTTAA TACTTTTGGT GTAGTTGGTA AATCTGCAAG AAGAAGTATT
ACACCTCAAA CTAATAATAG TAATAGTAGT TCAACTCCTT CAACTCCAAA
TAAATTTACT CCAATTGAAA CAACAACAAC TACTGCATCC ACAACTGAAA
CCAACAATAC TTCAACAACC AATGGTAAGA GAAGACTTGA AGATCTTATG
AATGGTGCTC AAGTACCAGA ATCATTTTCA ACAAATTCCG AAGAAAAAAA
ACAAAAACTA TAAATTATTA AAATAAAATA AAATAAATAA TAAATAAAAT
TTATTCTAAA AAAAAA

Translated Amino Acid Sequence Contig-U09097-1

kkkekfiyirqkkikkkn*kkiknknkyi*kkiiskkhkyrisqthte*rnfpvflink*
IINIYKSKKMDSKWFFIVLISFLLVLPSIVTPYRKSVEITNEEPQRDIYQLEKTNKMAEV
GDLGVASFLNILDTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSXPXCXXSSXSXSSXSLIAL
VASXIIKLKQRIXFKLKQ---

---NAIEEYDKALRIRKDIRDNDLRSIAEIHYAMGLAFHVDNKAPIAEKHYRTAIDLLGD
QLNKIQQSLNGETDTDKLKSLADEIQELKNIIVDLQGRLDEVVPIDTSNEPVPKELQQDE
QQPVFSTSASQNPIKPGTPVNTFGVVGKSARRSITPQTNNSNSSSTPSTPNKFTPIETTT
TTASTTETNNTSTTNGKRRLEDLMNGAQVPESFSTNSEEKKQKL*iikik*nk**ikfil
kk

Homology Contig-U09097-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U09097-1 (Contig-U09097-1Q) /CSM_Contig/Conti...  1386  0.0
Contig-U12602-1 (Contig-U12602-1Q) /CSM_Contig/Conti...   710  0.0
Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Conti...    40  0.008
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U10212-1 (Contig-U10212-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U09860-1 (Contig-U09860-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U01496-1 (Contig-U01496-1Q) /CSM_Contig/Conti...    38  0.034
Contig-U13935-1 (Contig-U13935-1Q) /CSM_Contig/Conti...    36  0.13
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    36  0.13

Homology Contig-U09097-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ402126) Dictyostelium discoideum cDNA clone:dds20f17, 3' ...  1172   0.0    1
(BJ361740) Dictyostelium discoideum cDNA clone:ddc18f13, 5' ...   513   e-176  2
(BJ360516) Dictyostelium discoideum cDNA clone:ddc6b15, 5' e...   513   e-176  2
(BJ411333) Dictyostelium discoideum cDNA clone:ddv3o24, 5' e...   513   e-176  2
(BJ389919) Dictyostelium discoideum cDNA clone:dds20f17, 5' ...   513   e-176  2
(BJ410041) Dictyostelium discoideum cDNA clone:ddv11a04, 5' ...   513   e-176  2
(BJ363164) Dictyostelium discoideum cDNA clone:ddc25k10, 5' ...   513   e-176  2
(BJ387957) Dictyostelium discoideum cDNA clone:dds7i03, 5' e...   507   e-175  2
(BJ363986) Dictyostelium discoideum cDNA clone:ddc29l11, 5' ...   505   e-174  2
(BJ414441) Dictyostelium discoideum cDNA clone:ddv19m05, 5' ...   505   e-174  2

Homology Contig-U09097-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q75JC9) RecName: Full=Uncharacterized protein DDB_G0271670; Fla...    96   3e-18
BC077440_1(BC077440|pid:none) Xenopus laevis histone-binding pro...    47   0.002
(P06180) RecName: Full=Histone-binding protein N1/N2;  &A25680(A...    47   0.002
A48819(A48819) nuclear autoantigenic sperm protein - human  &M97...    43   0.034
AK222816_1(AK222816|pid:none) Homo sapiens mRNA for nuclear auto...    41   0.17
AK299584_1(AK299584|pid:none) Homo sapiens cDNA FLJ53176 complet...    41   0.17
AL355480_5(AL355480|pid:none) Human DNA sequence from clone RP4-...    41   0.17
AY891927_1(AY891927|pid:none) Synthetic construct Homo sapiens c...    41   0.17
AF113699_1(AF113699|pid:none) Homo sapiens clone FLB7527 PRO1999...    41   0.17
AK298893_1(AK298893|pid:none) Homo sapiens cDNA FLJ53158 complet...    41   0.17