Dictyostelium discoideum cDNA Contig-U08895-1

Assembled

Chromosomal Location of Contig-U08895-1

Sequence Contig-U08895-1

GAAATTTTTA AATTTTNATT NAAGTGGTGG AGAGAAATAA TAATTCAAAT
AAAATATATT ATATGTAAAT AATTAAAAAA AAAAATAAAA AAAATGTCNG
ATGTAAGAGA TATTTTAGTT GGAGTATCTA GTGCAGTTGG TAATAAAGTT
GATAATACAT CAACAGCAGT TGAATCAATT TTAACAAATT CAAATACAAC
ACCAAAACGA CCACCTAAAG ATACNCCAAA GACAACAATG GAGAAATTAC
AACAAACTTT AAAGAATTTA GAGGGAGAAA CATTAACATT TGCTCCATCG
ACTTTAACCA AATCAGGATT AAAAGAAAAA AGAAAAATTA AAACCAATTG
GGATAGAAAA GGATTTAGAA ACAATTCAAG ACCAAACAAT GATGGTTTAG
TATTATATCA TTGGGTTAAA TCTACAGCCA ATGAAAAGGC AACATCAATC
GATTATAAAT TTTCAAAATT CAATAAAAAA ATGGAGATAT TATTCTATAA
TGAAGAAGAG TATGATTTAT ATTTACGTGA TGAAAAGNGG ----------
GAGAAGATAC TGATCAATTA TTAGAATTAT GTAAAAGATA TGATACAAGA
TTCATTATTA TAGCTGATAG ATTTGGTGAA AATAATATAA ATAATAATAA
TACCAATACA TCAAAAAAAA CAGTTGAAGA ATTAAAAGAA AGATATTATA
GAATTCAATC TAAATTAATT GAACTTCGTA CAAAAGCAGA GGAAGATCCA
TTTCAAAATC CTTTAACAAC TTATATATTC AATAAAGTTT ATGAAACTGA
AAGAAAAATA CAAAGTGATA AACTTTTTCA TCTCTCAAAA GAAGAGGTTG
CAGAGGAGGA ACAATTGGTT GAAAAATATA ATAGTATTGA AAATCATCTT
TTAAAACATA GTAAAGAGAG TAAATCAATT TTAAAAATAT CTCAAATAAT
TCACATACAC CAAATATTAT TGCATCACCA ATGGGTAGTG TTGGAATTAC
TTCACCACCA ATTGGTGGTA ATAGTATTGT TGGAATTAAT TCACCACAAA
TAATACCAAA TTTATCATCA CCACCACCAT CATCATCATC ATCAATTACA
TCAGTCTCAT CAACTTCACC AACCACTTTA GCTATTAATT CTGAAAAGAA
ACCAGAAGGT ACAAGTGGAG TTGGAGCATT TGGTAATTTA GATAGTTTTA
TAACTCAAAG TTTAAATAAC TCAATTATTC AACAAAAAGA ATGACAAAGA
AATTAGCAAA AGAGANAAGA CAACAAGAGA A

Translated Amino Acid Sequence Contig-U08895-1

eifkfxxkwwreiiiqikyiick*LKKKIKKMSDVRDILVGVSSAVGNKVDNTSTAVESI
LTNSNTTPKRPPKDTPKTTMEKLQQTLKNLEGETLTFAPSTLTKSGLKEKRKIKTNWDRK
GFRNNSRPNNDGLVLYHWVKSTANEKATSIDYKFSKFNKKMEILFYNEEEYDLYLRDEKX
---

---EDTDQLLELCKRYDTRFIIIADRFGENNINNNNTNTSKKTVEELKERYYRIQSKLIE
LRTKAEEDPFQNPLTTYIFNKVYETERKIQSDKLFHLSKEEVAEEEQLVEKYNSIENHLL
KHSKESKSILKISQIIHIHQILLHHQWVVLELLHHQLVVIVLLELIHHK*yqiyhhhhhh
hhhqlhqshqlhqpl*llilkrnqkvqvelehlvi*ivl*lkv*itqlfnkkndkeiskr
xkttre

Homology Contig-U08895-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U08895-1 (Contig-U08895-1Q) /CSM_Contig/Conti...  1271  0.0
Contig-U01624-1 (Contig-U01624-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U12179-1 (Contig-U12179-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U09640-1 (Contig-U09640-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U09478-1 (Contig-U09478-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U06247-1 (Contig-U06247-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U01619-1 (Contig-U01619-1Q) /CSM_Contig/Conti...    46  9e-05
Contig-U14601-1 (Contig-U14601-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14386-1 (Contig-U14386-1Q) /CSM_Contig/Conti...    44  4e-04

Homology Contig-U08895-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ371838) Dictyostelium discoideum cDNA clone:ddc1n18, 3' e...   779   0.0    3
(BJ358471) Dictyostelium discoideum cDNA clone:ddc1n18, 5' e...   436   0.0    4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    40   7e-04  17
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    42   0.001  9
(AM684816) Entamoeba terrapinae GSS, clone terra014e11.q1k.        44   0.001  2
(AZ535861) ENTBH84TR Entamoeba histolytica Sheared DNA Entam...    44   0.001  2
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    40   0.006  13
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.011  11
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.021  23
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   0.021  10

Homology Contig-U08895-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


CR954205_225(CR954205|pid:none) Ostreococcus tauri strain OTTH05...   113   1e-23
FB797695_1(FB797695|pid:none) Sequence 16968 from Patent WO20080...   107   9e-22
AC124961_26(AC124961|pid:none) Medicago truncatula clone mth2-18...   105   3e-21
AB493595_1(AB493595|pid:none) Arabidopsis thaliana At2g47210 mRN...   105   5e-21
AC135465_15(AC135465|pid:none) Medicago truncatula clone mth2-24...   104   6e-21
EF085259_1(EF085259|pid:none) Picea sitchensis clone WS02724_G17...   103   1e-20
AC002337_5(AC002337|pid:none) Arabidopsis thaliana chromosome 2 ...   102   4e-20
BC074546_1(BC074546|pid:none) Xenopus tropicalis DNA methyltrans...    96   4e-18
(Q9NPF5) RecName: Full=DNA methyltransferase 1-associated protei...    94   1e-17
AL035417_8(AL035417|pid:none) Human DNA sequence from clone RP5-...    94   1e-17