Homology Contig-U08895-1 vs DNA
Query= Contig-U08895-1 (Contig-U08895-1Q) /CSM_Contig/Contig-U08895-1Q.Seq.d
(1281 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ371838) Dictyostelium discoideum cDNA clone:ddc1n18, 3' e... 779 0.0 3
(BJ358471) Dictyostelium discoideum cDNA clone:ddc1n18, 5' e... 436 0.0 4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 7e-04 17
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 42 0.001 9
(AM684816) Entamoeba terrapinae GSS, clone terra014e11.q1k. 44 0.001 2
(AZ535861) ENTBH84TR Entamoeba histolytica Sheared DNA Entam... 44 0.001 2
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete... 40 0.006 13
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.011 11
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.021 23
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.021 10
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 0.022 15
(AC189138) Cavia porcellus clone CH234-295O1, WORKING DRAFT ... 36 0.022 8
(AC123471) Rattus norvegicus clone CH230-51H20, WORKING DRAF... 40 0.035 2
(AC133763) Rattus norvegicus clone CH230-4M20, *** SEQUENCIN... 40 0.035 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 0.040 15
(BZ295377) CG1449.r1 Candida glabrata Random Genomic Library... 40 0.051 2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 34 0.056 10
(CP000361) Arcobacter butzleri RM4018, complete genome. 32 0.15 20
(AM488986) Vitis vinifera contig VV78X105790.7, whole genome... 42 0.17 3
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ... 34 0.18 15
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 32 0.19 19
(FP325268) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.22 1
(CZ514120) GMW2-85C16a.b1 GMW2 Glycine max genomic, genomic ... 40 0.22 3
(AC235892) Glycine max strain Williams 82 clone GM_WBc0089E0... 36 0.23 8
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 0.23 16
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.31 16
(FE660342) UAHAUST_01B_F_E07 UaHaust_ARS Uromyces appendicul... 34 0.31 3
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 36 0.33 15
(AC212430) Solanum lycopersicum chromosome 11 clone C11HBa00... 46 0.35 5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 0.36 13
(BZ002887) oef03h07.b1 B.oleracea002 Brassica oleracea genom... 36 0.41 4
(AC097954) Rattus norvegicus clone CH230-106N20, *** SEQUENC... 36 0.47 8
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 0.50 22
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.53 15
(CU633164) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.53 10
(EJ211349) 1092347005499 Global-Ocean-Sampling_GS-27-01-01-1... 36 0.54 3
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome. 36 0.59 19
(CP000993) Borrelia recurrentis A1, complete genome. 30 0.68 21
(CP000976) Borrelia duttonii Ly, complete genome. 32 0.69 21
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 34 0.69 14
(CP000915) Francisella tularensis subsp. mediasiatica FSC147... 36 0.73 21
(BX004981) Zebrafish DNA sequence from clone CH211-169J7 in ... 38 0.79 6
(AC187747) Pan troglodytes BAC clone CH251-620B24 from chrom... 48 0.87 1
(FJ404769) Antirrhinum majus clone BAC AhXYTAC01 genomic seq... 48 0.87 1
(AM455603) Vitis vinifera contig VV78X192251.5, whole genome... 48 0.87 1
(AF311267) Toxorhynchites amboinensis NADH dehydrogenase sub... 48 0.87 1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 0.90 9
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.94 11
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 1.1 18
(AY301620) Bombyx mandarina from China mitochondrial DNA, co... 44 1.1 2
(AB070263) Bombyx mandarina mitochondrial DNA, complete genome. 44 1.1 2
(AL844507) Plasmodium falciparum 3D7 chromosome 8. 36 1.2 15
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 1.4 18
(AE017263) Mesoplasma florum L1 complete genome. 32 1.4 19
(EA742489) Sequence 13935 from patent US 7368527. 40 1.4 3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 36 1.5 2
(BX897700) Bartonella quintana str. Toulouse, complete genome. 32 1.5 2
(GC698011) Sequence 13256 from patent US 6812339. 40 1.6 3
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 36 1.7 16
(AC026554) Homo sapiens chromosome 3 clone RP11-635I10 map 3... 32 1.8 2
(AC068886) Homo sapiens chromosome 3 clone RP11-502F18 map 3... 32 1.8 2
(AC213010) Populus trichocarpa clone POP004-C07, complete se... 32 1.8 2
(AC092957) Homo sapiens 3 BAC RP11-635I10 (Roswell Park Canc... 32 1.8 2
(AC141688) Apis mellifera clone CH224-55I10, WORKING DRAFT S... 32 1.8 10
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 1.9 10
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 30 1.9 20
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 1.9 17
(AC214892) Procavia capensis clone CH280-484L4, WORKING DRAF... 36 2.0 6
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 2.0 11
(CP000016) Candidatus Blochmannia pennsylvanicus str. BPEN, ... 38 2.1 16
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 36 2.1 13
(AC149472) Medicago truncatula clone mth2-77f21, complete se... 38 2.3 6
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 2.3 20
(DC210535) Plasmodium berghei strain ANKA cDNA clone:MG01130... 36 2.3 2
(DC208512) Plasmodium berghei strain ANKA cDNA clone:MG00880... 36 2.4 2
(U28741) Caenorhabditis elegans cosmid F35D2, complete seque... 46 2.5 3
(AL357084) Human DNA sequence from clone RP11-471B18 on chro... 36 2.5 5
(FJ356097) Oncorhynchus mykiss conserved noncoding element 5... 46 2.6 2
(BJ426103) Dictyostelium discoideum cDNA clone:ddv57l06, 5' ... 36 2.7 2
(AC022260) Homo sapiens chromosome 8, clone RP11-426C8, comp... 34 2.8 8
(AM466442) Vitis vinifera contig VV78X006004.3, whole genome... 42 2.8 2
(AM477210) Vitis vinifera contig VV79X004026.3, whole genome... 42 2.8 2
(CR381632) Zebrafish DNA sequence from clone DKEY-265M15 in ... 46 2.9 6
(AM488839) Vitis vinifera, whole genome shotgun sequence, co... 44 3.1 3
(AX344565) Sequence 16 from Patent WO0200932. 34 3.2 11
(ED728930) GM_WBb0085C16.f GM_WBb Glycine max genomic clone ... 40 3.3 2
(CR376834) Zebrafish DNA sequence from clone CH211-247J24 in... 46 3.4 1
(AC159896) Mus musculus BAC clone RP23-265F16 from chromosom... 46 3.4 1
(FJ384796) Bombyx mandarina strain Qingzhou mitochondrion, c... 46 3.4 1
(EF437417) Bombyx mandarina 12S ribosomal RNA (rrns) gene, p... 46 3.4 1
(EF392866) Bombyx mori strain Ankang4 12S ribosomal RNA (rrn... 46 3.4 1
(EF158001) Bombyx mori strain Gansu 12S ribosomal RNA (rrnS)... 46 3.4 1
(EF158000) Bombyx mori strain Yuhang-bimol 12S ribosomal RNA... 46 3.4 1
(EF157999) Bombyx mori strain Yanhe1 12S ribosomal RNA (rrnS... 46 3.4 1
(EF157998) Bombyx mori strain Xinchang12 12S ribosomal RNA (... 46 3.4 1
(EF157997) Bombyx mori strain Sansi 12S ribosomal RNA (rrnS)... 46 3.4 1
(EF157996) Bombyx mori strain Sanisi 12S ribosomal RNA (rrnS... 46 3.4 1
(EF157995) Bombyx mori strain Mysore 12S ribosomal RNA (rrnS... 46 3.4 1
(EF157994) Bombyx mori strain Lan5 12S ribosomal RNA (rrnS) ... 46 3.4 1
(EF157993) Bombyx mori strain Handan 12S ribosomal RNA (rrnS... 46 3.4 1
(EF157992) Bombyx mori strain Dazao 12S ribosomal RNA (rrnS)... 46 3.4 1
(EF157991) Bombyx mori strain Daisou 12S ribosomal RNA (rrnS... 46 3.4 1
(AY048187) Bombyx mori strain Xiafang mitochondrion, complet... 46 3.4 1
(AL844502) Plasmodium falciparum 3D7 chromosome 3. 46 3.4 1
(AF295564) Bombyx mori tRNA-Gln gene, complete sequence; NAD... 46 3.4 1
(AF149768) Bombyx mori mitochondrion, complete genome. 46 3.4 1
(AB083339) Bombyx mori mitochondrial DNA, complete genome, s... 46 3.4 1
(AB070264) Bombyx mori mitochondrial DNA, complete genome, s... 46 3.4 1
(AP000936) Homo sapiens genomic DNA, chromosome 11q, clone:R... 46 3.4 1
(AL512424) Human DNA sequence from clone RP11-453E2 on chrom... 46 3.4 1
(AL450426) Human DNA sequence from clone RP11-317C20 on chro... 46 3.4 1
(AC129991) Rattus norvegicus clone CH230-101O23, *** SEQUENC... 46 3.4 1
(AC128124) Rattus norvegicus clone CH230-64C2, *** SEQUENCIN... 46 3.4 1
(AC098448) Rattus norvegicus clone CH230-2I23, *** SEQUENCIN... 46 3.4 1
(AC173122) Bos taurus clone CH240-487J11, WORKING DRAFT SEQU... 46 3.4 1
(AC024551) Homo sapiens chromosome 10 clone RP11-585K20 map ... 46 3.4 1
(ER604334) 1093016266806 Global-Ocean-Sampling_GS-36-01-01-2... 46 3.4 1
(EK306216) 1095462382416 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.4 1
(AM602758) Entamoeba invadens IP1 GSS, clone inv019f05.q1k. 46 3.4 1
(EI917977) VUH2-52I13TV VUUBBa (VUH2) Vigna unguiculata geno... 46 3.4 1
(DX560203) GH_MBb0079G18r GH_MBb Gossypium hirsutum genomic ... 46 3.4 1
(CZ937154) 256660 Tomato EcoRI BAC Library Solanum lycopersi... 46 3.4 1
(CT277165) Sus scrofa genomic clone PigE-78B4, genomic surve... 46 3.4 1
(CG765697) TcB50.3_C07_SP6 Tribolium BAC library Tribolium c... 46 3.4 1
(BZ516769) BOMQO06TR BO_2_3_KB Brassica oleracea genomic clo... 46 3.4 1
(DY230706) EST01442 BmP Bombyx mori cDNA clone BmpD_E60_2005... 46 3.4 1
(DV090973) 327-384-42_B07_M13-FP Nematostella vectensis norm... 46 3.4 1
(DR435784) ACAB-aaa37a04.g1 Hydra UCI6- barcoded EST's Hydra... 46 3.4 1
(DC543077) Bombyx mori cDNA, clone:E_FL_dpe-_19I14_F_0, 5' e... 46 3.4 1
(DC232763) Plasmodium berghei strain ANKA cDNA clone:SG02570... 46 3.4 1
(CN776123) tae77f06.y1 Hydra EST Darmstadt I Hydra magnipapi... 46 3.4 1
(CN775800) tae77f06.x1 Hydra EST Darmstadt I Hydra magnipapi... 46 3.4 1
(CN623587) tae08g05.y1 Hydra EST Darmstadt I Hydra magnipapi... 46 3.4 1
(CB017348) pgn1c.pk015.m6 Chicken lymphoid cDNA library (pgn... 46 3.4 1
(BY938713) Bombyx mori cDNA, clone:E_FL_e100_07L06_F_0, 5' e... 46 3.4 1
(BY937057) Bombyx mori cDNA, clone:E_FL_prW-_13F20_F_0, 5' e... 46 3.4 1
(BY936012) Bombyx mori cDNA, clone:E_FL_prW-_07L05_F_0, 5' e... 46 3.4 1
(BU380923) 603857193F1 CSEQCHN75 Gallus gallus cDNA clone Ch... 46 3.4 1
(BU239421) 603323445F1 CSEQCHN33 Gallus gallus cDNA clone Ch... 46 3.4 1
(BQ739495) PfESToab46f09.y1 Plasmodium falciparum 3D7 asexua... 46 3.4 1
(BJ434349) Dictyostelium discoideum cDNA clone:ddv16i18, 3' ... 46 3.4 1
(BJ432191) Dictyostelium discoideum cDNA clone:ddv17p24, 3' ... 46 3.4 1
(BB994037) Bombyx mori cDNA, clone:E_ET_psgV_21G06_R_0, 3' e... 46 3.4 1
(BB992694) Bombyx mori cDNA, clone:E_ET_psgV_01F03_R_0, 3' e... 46 3.4 1
(BB989214) Bombyx mori cDNA, clone:E_ET_psgV_21G02_F_0, 5' e... 46 3.4 1
(FH586795) CHO_OF4665xi15f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 3.4 2
(ET886089) CHO_OF089xd17r1.ab1 CHO_OF Nicotiana tabacum geno... 42 3.6 2
(EK207877) 1095460085603 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.6 2
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ... 34 3.7 21
(AL428426) clone BA0AB025F11 of library BA0AB from strain CL... 42 3.7 2
(AM467015) Vitis vinifera contig VV78X096949.5, whole genome... 42 3.7 3
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet... 34 3.8 21
(CR392347) Zebrafish DNA sequence from clone DKEY-37G12 in l... 40 3.8 9
(AM477561) Vitis vinifera contig VV78X042028.2, whole genome... 44 3.9 4
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 3.9 12
(AC169513) Medicago truncatula chromosome 2 BAC clone mte1-7... 38 4.4 6
(ET886011) CHO_OF089xd17f1.ab1 CHO_OF Nicotiana tabacum geno... 42 4.6 2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 4.8 9
(AX345433) Sequence 504 from Patent WO0200928. 38 5.1 5
(CN699843) E0427B11-5 NIA Mouse E11.5 whole embryo cDNA libr... 38 5.2 2
(AC209507) Solanum lycopersicum chromosome 6 clone C06HBa002... 34 5.4 8
(AC222246) Bos taurus clone CH240-413B3, WORKING DRAFT SEQUE... 38 5.8 5
(AL356320) Human DNA sequence from clone RP11-201O14 on chro... 42 5.8 3
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 36 6.1 18
(BY915894) Bombyx mori cDNA, clone:E_ET_maV3_07F11_F_1, 5' e... 36 6.3 3
(FP091245) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 6.3 2
(FP015876) Pig DNA sequence from clone CH242-74M3 on chromos... 32 6.4 2
(AC067800) Homo sapiens chromosome 2 clone RP11-23O8 map 2, ... 44 6.6 5
(AM478296) Vitis vinifera, whole genome shotgun sequence, co... 42 6.7 4
(BX248522) Zebrafish DNA sequence from clone CH211-113B2 in ... 36 6.7 5
(AC224962) Bos taurus clone CH240-471D4, WORKING DRAFT SEQUE... 38 6.7 7
(AE017321) Wolbachia endosymbiont strain TRS of Brugia malay... 36 6.9 16
(AC141533) Rattus norvegicus clone CH230-503I21, WORKING DRA... 34 6.9 2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 36 7.0 18
(AC101939) Mus musculus clone RP24-106J10, WORKING DRAFT SEQ... 36 7.0 6
(AW574210) EST316801 GVN Medicago truncatula cDNA clone pGVN... 34 7.2 2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 32 7.3 11
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 34 7.5 18
(CR936407) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 7.8 4
(EJ873544) 1093018357342 Global-Ocean-Sampling_GS-30-02-01-1... 38 8.3 3
(EI418885) PV_GBa0005O11.r PV_GBa Phaseolus vulgaris genomic... 32 8.5 2
(CT284438) Sus scrofa genomic clone CH242-273M3, genomic sur... 32 8.6 2
(GO272898) AOTB609.fwd AOTB Teleopsis dalmanni Mid-pupal eye... 32 8.7 2
(AI639145) rx02082s Rat mixed-tissue library Rattus norvegic... 36 8.8 2
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 38 8.9 14
(CO433728) UI-M-HX0-csm-g-19-0-UI.r1 NIH_BMAP_HX0 Mus muscul... 38 8.9 2
(CP001440) Borrelia valaisiana VS116 plasmid VS116_lp28-3, c... 32 9.1 9
(AM286280) Francisella tularensis subsp. tularensis strain F... 36 9.5 23
(AJ749949) Francisella tularensis subsp. tularensis SCHU S4 ... 36 9.5 23
(BG800792) 0053-17 Mouse E14.5 retina lambda ZAP II Library ... 38 9.5 2
(AC074190) Homo sapiens chromosome 11 clone RP11-465I24, WOR... 40 9.7 4
(AF451862) Tetrahymena thermophila clone pMBR 8E1 endonuclea... 38 9.9 4
>(BJ371838) Dictyostelium discoideum cDNA clone:ddc1n18, 3' end,
single read.
Length = 732
Score = 779 bits (393), Expect(3) = 0.0
Identities = 393/393 (100%)
Strand = Plus / Minus
Query: 671 cagttgaagaattaaaagaaagatattatagaattcaatctaaattaattgaacttcgta 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cagttgaagaattaaaagaaagatattatagaattcaatctaaattaattgaacttcgta 553
Query: 731 caaaagcagaggaagatccatttcaaaatcctttaacaacttatatattcaataaagttt 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caaaagcagaggaagatccatttcaaaatcctttaacaacttatatattcaataaagttt 493
Query: 791 atgaaactgaaagaaaaatacaaagtgataaactttttcatctctcaaaagaagaggttg 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgaaactgaaagaaaaatacaaagtgataaactttttcatctctcaaaagaagaggttg 433
Query: 851 cagaggaggaacaattggttgaaaaatataatagtattgaaaatcatcttttaaaacata 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cagaggaggaacaattggttgaaaaatataatagtattgaaaatcatcttttaaaacata 373
Query: 911 gtaaagagagtaaatcaattttaaaaatatctcaaataattcacatacaccaaatattat 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtaaagagagtaaatcaattttaaaaatatctcaaataattcacatacaccaaatattat 313
Query: 971 tgcatcaccaatgggtagtgttggaattacttcaccaccaattggtggtaatagtattgt 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcatcaccaatgggtagtgttggaattacttcaccaccaattggtggtaatagtattgt 253
Query: 1031 tggaattaattcaccacaaataataccaaattt 1063
|||||||||||||||||||||||||||||||||
Sbjct: 252 tggaattaattcaccacaaataataccaaattt 220
Score = 301 bits (152), Expect(3) = 0.0
Identities = 155/155 (100%)
Strand = Plus / Minus
Query: 1127 tttagctattaattctgaaaagaaaccagaaggtacaagtggagttggagcatttggtaa 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tttagctattaattctgaaaagaaaccagaaggtacaagtggagttggagcatttggtaa 97
Query: 1187 tttagatagttttataactcaaagtttaaataactcaattattcaacaaaaagaatgaca 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 tttagatagttttataactcaaagtttaaataactcaattattcaacaaaaagaatgaca 37
Query: 1247 aagaaattagcaaaagaganaagacaacaagagaa 1281
|||||||||||||||||||||||||||||||||||
Sbjct: 36 aagaaattagcaaaagaganaagacaacaagagaa 2
Score = 157 bits (79), Expect(3) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 552 agaagatactgatcaattattagaattatgtaaaagatatgatacaagattcattattat 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agaagatactgatcaattattagaattatgtaaaagatatgatacaagattcattattat 672
Query: 612 agctgatagatttggtgaa 630
|||||||||||||||||||
Sbjct: 671 agctgatagatttggtgaa 653
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,721,053,783
Number of extensions: 115372138
Number of successful extensions: 9669204
Number of sequences better than 10.0: 195
Length of query: 1281
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 1257
Effective length of database: 102,084,959,077
Effective search space: 128320793559789
Effective search space used: 128320793559789
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home