Dictyostelium discoideum cDNA Contig-U08887-1

Assembled

Chromosomal Location of Contig-U08887-1

NO HIT FOUND.

Sequence Contig-U08887-1

CAAATNCAAA CNCAAATNCA AATNCAAATN CAAATNCAGA TNCAGATTCA
ATTGAAGCCA CAACAACCCC AACACCAATA CCAACACCGG CNGTAGTAAC
TACACCACCA CCACCAACAA CAACAACAAC AACAACAACA ACAATGACAC
AAACATCAAC ATCAACAAGT AGTAATAGCG CAAATTCAGG TAATTTATTT
ATTAGTTTTT TACCAGCAAC TTATACAAGT GATACATTAC GTTCAATATT
TTCAGCATTT GGAGAGATAG ATAGTTGTAG AGTGATGGTA GATTTAAATA
CTGGATTAAG TAGAGGATTT GGTTTTGTAA AGTTTAAAGA TGTTGCAAGT
GCACAATATG CAATCAATTC AATGAATGGT GCAAAAGTTG AAAATAAAAC
ACTTTTAGTT AGATTTGCAA ACTCTGATCC AAATAGTAAT AATACAAATA
ATAGTAATAA TAATAATGAT GATGATAATA ATAATAATAA TAATAATAAT
AATAGTAATA ATAATAATAT TATTGAAGTT GGTAAGGCAA ATTACCAAAC
CTCAACATTG AACAATTCTC AAGATGATAG TTATCAACAA GAACAAGAGC
AACAAGAACA AGAATCACAA CAACAACAAC AACAACAACA ACAACAACAA
CAACAACAAC AACAACAACA ACAACAACAA CAACAACAAC AAAATTATAG
CTCAACACCA CCTAATATAA CACCACACCT TAAAGGTGAT GGTGGTTTAG
AGAAATGGTT TGGAAATAAC ATTTATTCTT TTGGCGCTTC CCAATCATTG
AATAATGAAA ATACAAACCC TAGTTATTCT TATGTACCTT ATAATAATAA
TAATAATAAT AATAATAATA ATAATAATAA ATAATATATA AATATTTATT
TTTAATTTAT TATTAAA--- -------CAA TCTGCAATCA ATGCTGTTAA
ATCCTTAAAT GGTTTCATTT TACAAGATCC TGAAAAACCT TTAATCGTAA
GATTCGCTGA TAATGAGGAT GAAAAGAAAC AAAAAAGACA AAAATTACAA
CAAAAACAAG TTAGACAAAA TATGAGATTT TCACCATACC CACAACAACA
ACAACAACAG CAACAACAAC AACAGCAAAT GATGAATTCA TCAGGTGCAA
TGATGTATCC ATTTTATCAA AATATGCCAA CAATGAATAG TTTACCAAAT
TCAATGATTG GGTNTTCATC ACAACCACCA CCTGGTGGAA AGAATCCAGG
AACTGATCCA ACCAATTTAT ATGTTTACAA TTTACCAAGT GATGCTGATG
ATTCACTTTT ATATAGATTA TTTTCACCTT GTGGCGCAAT TGCAAGTGTT
AAAATAGTTC GTGATCAAAC CACTCAAGTT TGTANAGGTT ATGGTTTCGT
TAGAATGGTT AGTTTGGCTG ATTCCTATTC AGCTATTAAT TCAATTAATG
GTGTTCAAGT TGGTGGTAAA ACAATTTCAG TTTCTTTTAA AAAATAATAT
TAAAAACTAA ATAATAAAAA AAATAAAAAA AAAATAAAAG AAATAACAAA
TAATTAAATA ATTAAAAAAA AATAAAAAA

Translated Amino Acid Sequence Contig-U08887-1

qxqtqxqxqxqxqxqiqlkpqqpqhqyqhrx**lhhhhqqqqqqqqqq*hkhqhqqvvia
qiqviyllvfyqqliqvihyvqyfqhler*ivve*w*i*ild*vedlvl*slkmlqvhnm
qsiq*mvqklkikhf*ldlqtliqiviiqiiviiimmmiiiiiiiiiiviiiillklvrq
itkpqh*tilkmivinknksnknknhnnnnnnnnnnnnnnnnnnnnnnnnkiiaqhhli*
hhtlkvmvv*rngleitfillalpnh*imkiqtlvilmyliiiiiiiiiiiiinni*IFI
FNLLL---

---QSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVRQNMRFSPYPQQ
QQQQQQQQQQMMNSSGAMMYPFYQNMPTMNSLPNSMIGXSSQPPPGGKNPGTDPTNLYVY
NLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCXGYGFVRMVSLADSYSAINSINGVQ
VGGKTISVSFKK*y*klnnkknkkkikeitnn*iikkk*k

Homology Contig-U08887-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U08887-1 (Contig-U08887-1Q) /CSM_Contig/Conti...   706  0.0
Contig-U13691-1 (Contig-U13691-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U11979-1 (Contig-U11979-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U01980-1 (Contig-U01980-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11388-1 (Contig-U11388-1Q) /CSM_Contig/Conti...    38  0.028
Contig-U14342-1 (Contig-U14342-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U14238-1 (Contig-U14238-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U12295-1 (Contig-U12295-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U11869-1 (Contig-U11869-1Q) /CSM_Contig/Conti...    36  0.11
Contig-U11815-1 (Contig-U11815-1Q) /CSM_Contig/Conti...    36  0.11

Homology Contig-U08887-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ346271) Dictyostelium discoideum cDNA clone:dda30l12, 3' ...   708   0.0    3
(BJ433525) Dictyostelium discoideum cDNA clone:ddv22l03, 3' ...   684   0.0    2
(BJ415312) Dictyostelium discoideum cDNA clone:ddv22l03, 5' ...   521   e-143  1
(AU060872) Dictyostelium discoideum slug cDNA, clone SLB832.      293   8e-95  2
(AU265133) Dictyostelium discoideum vegetative cDNA clone:VS...   293   1e-74  1
(AU265132) Dictyostelium discoideum vegetative cDNA clone:VS...   180   1e-71  2
(BJ329003) Dictyostelium discoideum cDNA clone:dda30l12, 5' ...   161   5e-35  2
(BZ079686) lkg21b04.b1 B.oleracea002 Brassica oleracea genom...    38   0.020  3
(AC126013) Medicago truncatula clone mth2-32e10, complete se...    40   0.99   3
(DR918296) EST1109835 Aquilegia cDNA library Aquilegia formo...    48   1.1    1

Homology Contig-U08887-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q54R73) RecName: Full=Uncharacterized protein DDB_G0283357;          142   4e-32
AX463221_1(AX463221|pid:none) Sequence 22 from Patent WO0249625....    84   1e-14
AB209294_1(AB209294|pid:none) Homo sapiens mRNA for ELAV (embryo...    83   2e-14
AL837505_1(AL837505|pid:none) Mouse DNA sequence from clone RP23...    83   2e-14
AK141919_1(AK141919|pid:none) Mus musculus 12 days embryo spinal...    83   2e-14
AL837505_2(AL837505|pid:none) Mouse DNA sequence from clone RP23...    83   2e-14
(Q12926) RecName: Full=ELAV-like protein 2; AltName: Full=Hu-ant...    83   2e-14
CR860401_1(CR860401|pid:none) Pongo abelii mRNA; cDNA DKFZp459N1...    82   4e-14
(Q60899) RecName: Full=ELAV-like protein 2; AltName: Full=Hu-ant...    82   4e-14
BC036071_1(BC036071|pid:none) Homo sapiens ELAV (embryonic letha...    82   4e-14