Homology Contig-U08430-1 vs DNA
Query= Contig-U08430-1 (Contig-U08430-1Q) /CSM_Contig/Contig-U08430-1Q.Seq.d
(466 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ402683) Dictyostelium discoideum cDNA clone:dds17n15, 3' ... 850 0.0 1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 490 0.0 3
(AY392439) Dictyostelium discoideum P-selectin gene, complet... 490 0.0 3
(AC225020) Solanum lycopersicum chromosome 1 clone C01HBa006... 40 0.015 3
(CE084208) tigr-gss-dog-17000358987130 Dog Library Canis lup... 52 0.020 1
(CU914688) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.092 5
(ED375438) AUAC-aac42b08.b1 Ascaris suum whole genome shotgu... 34 0.12 3
(AL110502) Human DNA sequence from clone RP4-635E8 on chromo... 32 0.20 5
(Z95331) Human DNA sequence from clone CTA-941F9 on chromoso... 48 0.31 1
(AC136057) Rattus norvegicus clone CH230-102N11, *** SEQUENC... 48 0.31 1
(DX033364) KBrB030M14R KBrB, Brassica rapa BamHI BAC library... 48 0.31 1
(DY023179) 63JKCOT5_T3_038_B06_25JAN2005_046 63JKCOT5 Brassi... 48 0.31 1
(CX281907) JKBNHS1_UP_015_G06_02JUL2004_036 Brassica napus J... 48 0.31 1
(EV100417) 0180959 Brassica napus Leaf library Brassica napu... 48 0.31 1
(ES957840) 9RDBNGA_UP_170_F11_12MAR2006_085 Brassica napus 9... 48 0.31 1
(ES931503) 36RDBRG_UP_104_D01_20JAN2006_009 Brassica rapa 36... 48 0.31 1
(ES916841) 24RDBNH_UP_104_F08_9MAR2006_054 Brassica napus 24... 48 0.31 1
(ED709857) GM_WBb0056I03.f GM_WBb Glycine max genomic clone ... 38 0.50 2
(AC188688) Pan troglodytes BAC clone CH251-701A7 from chromo... 44 0.65 4
(AC162545) Bos taurus clone CH240-122M11, WORKING DRAFT SEQU... 38 0.99 5
(AC146173) Pan troglodytes BAC clone RP43-36F20 from chromos... 44 1.0 4
(FB596751) Sequence 12474 from Patent WO2004081186. 32 1.1 5
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 32 1.1 6
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 36 1.2 13
(DD010736) Diagnosis of known genetic Parameters within the ... 46 1.2 1
(AX344566) Sequence 17 from Patent WO0200932. 46 1.2 1
(FP325202) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(AC214948) Pan troglodytes clone ptb-141h19, WORKING DRAFT S... 46 1.2 1
(AI979377) fd36a01.y1 Zebrafish WashU MPIMG EST Danio rerio ... 46 1.2 1
(FC776057) CBBN9796.rev CBBN Lottia gigantea 3,4,5,6.5d Larv... 46 1.2 1
(AC154830) Mus musculus BAC clone RP24-553I3 from chromosome... 36 1.5 5
(BX530062) Zebrafish DNA sequence from clone DKEY-13M1 in li... 40 1.6 4
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 34 1.8 5
(AC215899) Populus trichocarpa clone POP051-J14, complete se... 44 2.1 4
(AC185956) Populus trichocarpa clone Pop1-93N08, complete se... 44 2.2 2
(AC084724) Homo sapiens BAC clone RP11-613O14 from 4, comple... 34 2.4 2
(AC116642) Homo sapiens chromosome 4 clone RP11-633G6, *** S... 34 2.4 2
(FP102875) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.0 4
(AC138056) Medicago truncatula clone mth2-13i6, complete seq... 36 3.2 5
(FG767687) G1147P350RJ5.T0 Anolis carolinensis pooled normal... 32 3.2 2
(CS374507) Sequence 610 from Patent WO2006034879. 44 3.2 2
(CS374235) Sequence 338 from Patent WO2006034879. 44 3.2 2
(BX470109) Mouse DNA sequence from clone RP23-59I3 on chromo... 38 3.3 5
(AC164169) Mus musculus 6 BAC RP23-413M4 (Roswell Park Cance... 38 3.4 6
(AC233631) Solanum tuberosum strain Diploid genotype RH89-03... 40 3.8 4
(AM640725) Entamoeba dispar GSS, clone dispar77c05.q1k. 38 4.1 2
(ES403894) MUT15-K04.y1d-s SHGC-MUT Mytilus californianus cD... 28 4.2 4
(EA679220) Sequence 58099 from patent US 7365185. 38 4.5 2
(CT737170) Zebrafish DNA sequence from clone DKEY-259I5 in l... 44 4.8 1
(CR450753) Zebrafish DNA sequence from clone DKEY-225F3 in l... 44 4.8 1
(BX276177) Zebrafish DNA sequence from clone CH211-223M11 in... 44 4.8 1
(AL953859) Zebrafish DNA sequence from clone DKEY-53P21. 44 4.8 1
(AC216677) Populus trichocarpa clone POP103-G02, complete se... 44 4.8 1
(AC183425) Populus trichocarpa clone Pop1-41C9, complete seq... 44 4.8 1
(AP008999) Bombyx mori genomic DNA, chromosome 16, BAC clone... 44 4.8 1
(AC092098) Homo sapiens BAC clone RP11-533K11 from 7, comple... 44 4.8 1
(CU656023) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.8 1
(AC182724) Populus trichocarpa clone Pop1-93N8, WORKING DRAF... 44 4.8 1
(EJ672641) 1092955064867 Global-Ocean-Sampling_GS-30-02-01-1... 44 4.8 1
(CZ814959) OC__Ba0191C14.f OC__Ba Oryza coarctata genomic cl... 44 4.8 1
(CL908055) OA_ABa0007E08.f OA_ABa Oryza australiensis genomi... 44 4.8 1
(EB897078) 9887456 ZF26XL Danio rerio cDNA clone 3511830, mR... 44 4.8 1
(CI123808) Oryza sativa Japonica Group cDNA, clone: 024-M094... 44 4.8 1
(CI121625) Oryza sativa Japonica Group cDNA, clone: 024-M060... 44 4.8 1
(EI315495) GM_WBc0048I14.f GM_WBc Glycine max genomic clone ... 34 4.8 3
(BX140766) Danio rerio genomic clone DKEY-98I17, genomic sur... 30 4.8 3
(AC175884) Strongylocentrotus purpuratus clone R3-15B8, WORK... 38 5.1 2
(EK133430) 1093011411506 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.4 3
(FB571382) Sequence 249 from Patent EP1865317. 30 5.6 8
(AC145331) Medicago truncatula clone mth2-8o7, complete sequ... 32 6.0 7
(CR790373) Zebrafish DNA sequence from clone CH211-180B7 in ... 40 6.2 3
(AM626339) Entamoeba dispar GSS, clone dispar127f01.q1k. 38 6.6 2
(BH692595) BOMIM37TR BO_2_3_KB Brassica oleracea genomic clo... 38 6.8 2
(DU520122) 1098609838657 CHORI-243 Ovis aries genomic clone ... 38 7.1 2
(DY677653) TT1AS95TV Tetrahymena thermophila EST library str... 40 7.1 2
(CU459065) Zebrafish DNA sequence from clone CH211-149K23 in... 38 7.2 3
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 32 7.6 11
(CR555304) Zebrafish DNA sequence from clone DKEY-18C20 in l... 40 8.2 3
(FB571381) Sequence 248 from Patent EP1865317. 36 8.8 7
(AC025489) Homo sapiens chromosome 1 clone RP11-168A23 map 1... 36 8.8 6
(AC215944) Populus trichocarpa clone POP073-M17, complete se... 30 8.9 2
(AC016688) Homo sapiens chromosome 13 clone RP11-80J14, WORK... 34 9.5 4
(CT583648) Zebrafish DNA sequence from clone CH211-189E22 in... 32 9.6 5
(AC084211) Homo sapiens 3 BAC RP11-338L18 (Roswell Park Canc... 34 9.7 6
>(BJ402683) Dictyostelium discoideum cDNA clone:dds17n15, 3' end,
single read.
Length = 457
Score = 850 bits (429), Expect = 0.0
Identities = 456/456 (100%)
Strand = Plus / Minus
Query: 11 ataattgtaaaataatttacaaatgattgagttaaatttgaaaatatatgttttggtggt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ataattgtaaaataatttacaaatgattgagttaaatttgaaaatatatgttttggtggt 398
Query: 71 aaaattattgnatacaatttaaaagtttcagtattcactataacttcttttgtataattt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aaaattattgnatacaatttaaaagtttcagtattcactataacttcttttgtataattt 338
Query: 131 ccaccntgtattatttttacaatctgtataatttgttagagtttccattacaccaatact 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ccaccntgtattatttttacaatctgtataatttgttagagtttccattacaccaatact 278
Query: 191 attattaaatgtgcatggaaatgtttgattctctctaacacttgtaaatgttgaaatatt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 attattaaatgtgcatggaaatgtttgattctctctaacacttgtaaatgttgaaatatt 218
Query: 251 ttttaaacctgggaattctgcccnaactgtataatgctcattttganccatgaaattagt 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ttttaaacctgggaattctgcccnaactgtataatgctcattttganccatgaaattagt 158
Query: 311 atttggtatttttattgtagtgaattcgtcaactcttggatgataatctgtagacattaa 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 atttggtatttttattgtagtgaattcgtcaactcttggatgataatctgtagacattaa 98
Query: 371 tnatttgcttttattattatgtnatgaaaaatctcatnaatgaccaatcacnatctttga 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tnatttgcttttattattatgtnatgaaaaatctcatnaatgaccaatcacnatctttga 38
Query: 431 tacacttattatttgaatcanatagtaatacctatt 466
||||||||||||||||||||||||||||||||||||
Sbjct: 37 tacacttattatttgaatcanatagtaatacctatt 2
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 660,780,367
Number of extensions: 43564355
Number of successful extensions: 3485268
Number of sequences better than 10.0: 85
Length of query: 466
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 443
Effective length of database: 102,190,702,835
Effective search space: 45270481355905
Effective search space used: 45270481355905
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
Dictyostelium discoideum cDNA Project Home