Homology Contig-U08330-1 vs DNA
Query= Contig-U08330-1 (Contig-U08330-1Q) /CSM_Contig/Contig-U08330-1Q.Seq.d
(1009 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU263899) Dictyostelium discoideum vegetative cDNA clone:VS... 1340 0.0 2
(AC117082) Dictyostelium discoideum chromosome 2 map complem... 1201 0.0 1
(AU263898) Dictyostelium discoideum vegetative cDNA clone:VS... 961 0.0 2
(AU037187) Dictyostelium discoideum slug cDNA, clone SSB584. 944 0.0 1
(C84903) Dictyostelium discoideum slug cDNA, clone SSE832. 571 e-158 1
(AU271663) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 535 e-147 1
(AU271525) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 535 e-147 1
(AU271524) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 535 e-147 1
(C90823) Dictyostelium discoideum slug cDNA, clone SSJ189. 402 e-122 2
(AU072546) Dictyostelium discoideum slug cDNA, clone SSE832. 369 e-110 2
(EJ453955) 1093015491156 Global-Ocean-Sampling_GS-28-01-01-1... 48 7e-04 2
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 44 0.009 6
(EJ499612) 1095403608504 Global-Ocean-Sampling_GS-28-01-01-1... 42 0.035 2
(ER350101) 1092346001687 Global-Ocean-Sampling_GS-34-01-01-1... 40 0.13 2
(EJ806096) 1093017459962 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.13 2
(EJ147938) 1092343732205 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.13 2
(EJ409130) 1093012122601 Global-Ocean-Sampling_GS-28-01-01-1... 40 0.13 2
(EJ805764) 1093017458810 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.13 2
(AC225532) Medicago truncatula clone mth2-105l11, WORKING DR... 50 0.17 1
(AC225468) Medicago truncatula clone mth2-175c18, WORKING DR... 50 0.17 1
(AC225463) Medicago truncatula clone mth2-170h21, WORKING DR... 50 0.17 1
(ER463176) 1092963907061 Global-Ocean-Sampling_GS-35-01-01-1... 38 0.49 2
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 36 1.3 2
(AC235868) Glycine max strain Williams 82 clone GM_WBb0126G1... 36 1.4 2
(BX927113) Zebrafish DNA sequence from clone DKEY-5N1 in lin... 46 2.7 1
(BX324138) Zebrafish DNA sequence from clone CH211-127F10 in... 46 2.7 1
(AP002517) Homo sapiens genomic DNA, chromosome 11q clone:RP... 46 2.7 1
(AP002512) Homo sapiens genomic DNA, chromosome 11q clone:CT... 46 2.7 1
(AP001099) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 46 2.7 1
(AC100954) Mus musculus clone RP23-73P20, LOW-PASS SEQUENCE ... 46 2.7 1
(FP074900) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.7 1
(AP002009) Homo sapiens genomic DNA, chromosome 11q13 clone:... 46 2.7 1
(AP001911) Homo sapiens genomic DNA, chromosome 18p11.3 clon... 46 2.7 1
(AP001283) Homo sapiens genomic DNA, chromosome 18p11.2 clon... 46 2.7 1
(AP001112) Homo sapiens genomic DNA, chromosome 11q12 clone:... 46 2.7 1
(AC196692) Gallus gallus chromosome UNKNOWN clone CH261-172L... 46 2.7 1
(AC018746) Homo sapiens clone H_NH0404F04, WORKING DRAFT SEQ... 46 2.7 1
(AC015677) Homo sapiens chromosome 18 clone RP11-205G20 map ... 46 2.7 1
(ET010925) MUGQ_CH252P313C04T7_CP569_014 CHORI-252 Vervet Mo... 46 2.7 1
(ED561939) MUGQ_CH252P142J05Sp6_CN145_023 CHORI-252 Vervet M... 46 2.7 1
(CN409534) 17000583182053 GRN_PRENEU Homo sapiens cDNA 5', m... 46 2.7 1
(BU656121) cl06g02.z1 Hembase; Erythroid Precursor Cells (LC... 46 2.7 1
(BU656042) cl05g02.z1 Hembase; Erythroid Precursor Cells (LC... 46 2.7 1
(AC214536) Zea mays chromosome 5 clone CH201-151O21; ZMMBBc0... 34 5.0 2
(AM285308) Spiroplasma citri GII3-3X chromosome, contig Cont... 44 5.1 2
(AC224728) Bos taurus clone CH240-478C12, WORKING DRAFT SEQU... 38 5.1 6
(AC073573) Homo sapiens 12 BAC RP11-1136G11 (Roswell Park Ca... 40 5.3 2
(ER330525) 1092344254294 Global-Ocean-Sampling_GS-34-01-01-1... 34 6.8 2
(EK330087) 1095467020850 Global-Ocean-Sampling_GS-31-01-01-1... 34 6.8 2
(EJ414192) 1093012169993 Global-Ocean-Sampling_GS-28-01-01-1... 34 6.8 2
(CF315824) HD--04-O04.g1 OsHDAC1-overexpressing transgenic r... 32 7.1 2
(AC025133) Homo sapiens chromosome 8, clone RP11-227F6, comp... 36 9.6 5
>(AU263899) Dictyostelium discoideum vegetative cDNA clone:VSD357,
3' end single read.
Length = 713
Score = 1340 bits (676), Expect(2) = 0.0
Identities = 676/676 (100%)
Strand = Plus / Plus
Query: 73 acctttcaccagaacaagaacatcaattaggtattattaaatctaaaattgcagaaatta 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctttcaccagaacaagaacatcaattaggtattattaaatctaaaattgcagaaatta 60
Query: 133 atgatccagttgtagaaaaagaaattcaacaattagatgattctatgaccttaagatttt 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgatccagttgtagaaaaagaaattcaacaattagatgattctatgaccttaagatttt 120
Query: 193 taagagctagaaaatggaatctaaaagattcatttgatatgctctatgaagcattaaaat 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taagagctagaaaatggaatctaaaagattcatttgatatgctctatgaagcattaaaat 180
Query: 253 tccgagcaacatttcaagatgttggagttgaaggtataacagaatcaatggttgttaatg 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccgagcaacatttcaagatgttggagttgaaggtataacagaatcaatggttgttaatg 240
Query: 313 aattaaagagtggtaagagttatttccatggtgttgataaaggtggtagaccagtttgta 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aattaaagagtggtaagagttatttccatggtgttgataaaggtggtagaccagtttgta 300
Query: 373 ttgttaaaaccagtagacatgatagttacaacagagatttgaatgaatcgatgagatatt 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgttaaaaccagtagacatgatagttacaacagagatttgaatgaatcgatgagatatt 360
Query: 433 gtgtctacgtaatggaaaatggtaaatcaatgttaaaggacggtattgaaacttgtacac 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtgtctacgtaatggaaaatggtaaatcaatgttaaaggacggtattgaaacttgtacac 420
Query: 493 ttattttcgatatgtctgattttagttcaaaaaatatggattatccattggttaaattta 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttattttcgatatgtctgattttagttcaaaaaatatggattatccattggttaaattta 480
Query: 553 tggttgaattatttcaaaagttttatccagaatcattacaaaaatgtttaattttaaatg 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggttgaattatttcaaaagttttatccagaatcattacaaaaatgtttaattttaaatg 540
Query: 613 caccttggatctttatgggaatttggcatatcatcaaacattggttagatccaaataccg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 caccttggatctttatgggaatttggcatatcatcaaacattggttagatccaaataccg 600
Query: 673 cttcaaaagtttcttttgtcaaaactaaacaattggttgattatattccaaaagatcaat 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cttcaaaagtttcttttgtcaaaactaaacaattggttgattatattccaaaagatcaat 660
Query: 733 tagaaagttcttatgg 748
||||||||||||||||
Sbjct: 661 tagaaagttcttatgg 676
Score = 50.1 bits (25), Expect(2) = 0.0
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 751 gaacaagtacatttaaatatactta 775
|||||||||||||||||||||||||
Sbjct: 678 gaacaagtacatttaaatatactta 702
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,105,416,174
Number of extensions: 66128488
Number of successful extensions: 5201880
Number of sequences better than 10.0: 52
Length of query: 1009
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 985
Effective length of database: 102,084,959,077
Effective search space: 100553684690845
Effective search space used: 100553684690845
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home