Homology Contig-U08163-1 vs DNA
Query= Contig-U08163-1 (Contig-U08163-1Q) /CSM_Contig/Contig-U08163-1Q.Seq.d
(1248 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ344309) Dictyostelium discoideum cDNA clone:dda18h01, 3' ... 1265 0.0 2
(BJ375009) Dictyostelium discoideum cDNA clone:ddc17h04, 3' ... 1207 0.0 2
(BJ361424) Dictyostelium discoideum cDNA clone:ddc17h04, 5' ... 959 0.0 3
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1... 513 e-141 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.007 15
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 40 0.022 17
(CP000361) Arcobacter butzleri RM4018, complete genome. 36 0.024 22
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete... 36 0.037 16
(AY301620) Bombyx mandarina from China mitochondrial DNA, co... 50 0.055 3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 38 0.065 13
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 0.12 10
(AL954696) Zebrafish DNA sequence from clone CH211-234K4. 36 0.19 5
(EJ190776) 1092344194138 Global-Ocean-Sampling_GS-27-01-01-1... 50 0.21 1
(CC071062) CSU-K33r.11E9.T7 CSU-K33r Aedes aegypti genomic c... 48 0.24 2
(CC082990) CSU-K33r.14C15.T7 CSU-K33r Aedes aegypti genomic ... 48 0.26 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.26 16
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 0.29 12
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome. 34 0.35 19
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 34 0.49 18
(EE145398) SiJWH08CAJ2 Lausanne fire ant library Solenopsis ... 30 0.54 4
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 0.60 10
(DQ096570) Bombus ignitus thioredoxin-like protein (txl) gen... 36 0.65 3
(AY048187) Bombyx mori strain Xiafang mitochondrion, complet... 42 0.73 4
(FJ384796) Bombyx mandarina strain Qingzhou mitochondrion, c... 42 0.74 4
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 0.79 13
(AC068061) Homo sapiens chromosome 10 clone RP11-444F4, comp... 48 0.85 1
(AC022019) Homo sapiens clone RP11-235E14, WORKING DRAFT SEQ... 48 0.85 1
(CL046295) CH216-64A17_Sp6.1 CH216 Xenopus (Silurana) tropic... 48 0.85 1
(BP649730) Arabidopsis thaliana cDNA clone:RAFL19-80-G01, 3'... 48 0.85 1
(ER478823) 1093015252631 Global-Ocean-Sampling_GS-35-01-01-1... 42 0.88 2
(EJ145819) 1092343711474 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.91 2
(ER430633) 1092963775896 Global-Ocean-Sampling_GS-35-01-01-1... 40 0.93 2
(EK441390) 1091120650993 Global-Ocean-Sampling_GS-32-01-01-1... 42 0.95 2
(EK118920) 1092963308244 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.95 2
(EK438676) 1095521362020 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.96 2
(EJ152161) 1092343773033 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.96 2
(ER312932) 1092343806960 Global-Ocean-Sampling_GS-34-01-01-1... 40 0.97 2
(EK175108) 1095458094256 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.97 2
(EJ544834) 1092956076277 Global-Ocean-Sampling_GS-29-01-01-1... 40 0.99 2
(EJ448663) 1093015386342 Global-Ocean-Sampling_GS-28-01-01-1... 40 1.0 2
(EJ342044) 1092963521515 Global-Ocean-Sampling_GS-28-01-01-1... 40 1.0 2
(ER532222) 1093015777209 Global-Ocean-Sampling_GS-35-01-01-1... 40 1.0 2
(EJ869589) 1093018339373 Global-Ocean-Sampling_GS-30-02-01-1... 40 1.0 2
(ER485363) 1093015294686 Global-Ocean-Sampling_GS-35-01-01-1... 40 1.0 2
(ER390611) 1095323010120 Global-Ocean-Sampling_GS-34-01-01-1... 40 1.1 2
(EK543760) 1095516074122 Global-Ocean-Sampling_GS-32-01-01-1... 42 1.1 2
(FP312855) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.1 7
(AE017243) Mycoplasma hyopneumoniae J, complete genome. 34 1.1 17
(EK099853) 1092963007431 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.2 2
(AB501204) Dilipa morgiana mitochondrial COI, COII, ATP8, CO... 42 1.4 3
(AC183809) Glycine tomentella clone gtt1-188p11, complete se... 34 1.5 6
(AB501192) Doxocopa linda mitochondrial COI, COII, ATP8, COI... 42 1.5 3
(BX538352) Cryptosporidium parvum chromosome 6, complete seq... 34 1.6 10
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29... 34 1.6 7
(AC092108) Homo sapiens BAC clone RP11-1263I10 from 7, compl... 38 1.7 3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 1.8 7
(AC152955) Mus musculus 6 BAC RP23-377G14 (Roswell Park Canc... 36 1.8 4
(AX344883) Sequence 308 from Patent WO0200927. 40 1.9 2
(AC152424) Medicago truncatula chromosome 8 clone mth2-58m16... 36 1.9 6
(AE017245) Mycoplasma synoviae 53, complete genome. 34 2.2 17
(AM945278) Psychotria kirkii chloroplast partial ndhF gene f... 44 2.2 2
(ER502250) 1093015404331 Global-Ocean-Sampling_GS-35-01-01-1... 32 2.3 2
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 34 2.3 19
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome. 38 2.3 19
(BS000562) Pan troglodytes chromosome Y clone:PTB-575P16, co... 40 2.3 7
(AM422018) Candidatus Phytoplasma australiense complete genome. 40 2.3 17
(AJ236307) Psychotria kirkii chloroplast ndhF gene. 44 2.4 2
(AE017263) Mesoplasma florum L1 complete genome. 34 2.5 19
(EJ743700) 1092962037985 Global-Ocean-Sampling_GS-30-02-01-1... 34 2.5 3
(AC189652) Brassica rapa subsp. pekinensis clone KBrS012D09,... 44 2.6 3
(DJ386590) Diagnosis of Diseases Associated with Metastasis. 34 2.8 3
(AX348952) Sequence 410 from Patent WO0202807. 34 2.8 3
(AX281386) Sequence 50 from Patent WO0177376. 34 2.8 3
(ED733837) GM_WBb0092B22.r GM_WBb Glycine max genomic clone ... 36 3.0 2
(AC179454) Strongylocentrotus purpuratus clone R3-1040G19, W... 38 3.0 6
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 36 3.0 20
(CS468878) Sequence 69 from Patent EP1748080. 30 3.2 13
(CS419355) Sequence 69 from Patent WO2006094836. 30 3.2 13
(EJ482962) 1095403482024 Global-Ocean-Sampling_GS-28-01-01-1... 40 3.3 2
(AC225232) Oryza officinalis clone OO__Ba0001O14, *** SEQUEN... 36 3.3 6
(AC144772) Mus musculus BAC clone RP24-173G12 from chromosom... 46 3.3 1
(AP009839) Lotus japonicus genomic DNA, chromosome 4, clone:... 46 3.3 1
(DM022332) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 46 3.3 1
(DM022204) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN... 46 3.3 1
(CS623700) Sequence 251 from Patent WO2006071466. 46 3.3 1
(CS623572) Sequence 123 from Patent WO2006071466. 46 3.3 1
(CS452637) Sequence 37 from Patent WO2006119494. 46 3.3 1
(CS452636) Sequence 36 from Patent WO2006119494. 46 3.3 1
(BD460360) Diagnosis of Diseases Associated with Cell Cycle. 46 3.3 1
(BD452282) Diagnosis of Diseases Associated with Cell Cycle. 46 3.3 1
(AX348707) Sequence 165 from Patent WO0202807. 46 3.3 1
(AX344292) Sequence 139 from Patent WO0200926. 46 3.3 1
(AX251896) Sequence 157 from Patent WO0168911. 46 3.3 1
(AC151060) Bos taurus BAC CH240-293H4 (Children's Hospital O... 46 3.3 1
(AL355273) Human DNA sequence from clone RP11-714M16 on chro... 46 3.3 1
(AC223890) Bos taurus clone CH240-455A18, WORKING DRAFT SEQU... 46 3.3 1
(AC164759) Bos taurus clone CH240-155K9, *** SEQUENCING IN P... 46 3.3 1
(AZ718764) RPCI-24-143E22.TJ RPCI-24 Mus musculus genomic cl... 46 3.3 1
(AQ506939) RPCI-11-278I18.TV RPCI-11 Homo sapiens genomic cl... 46 3.3 1
(ER555211) 1093016310532 Global-Ocean-Sampling_GS-35-01-01-1... 46 3.3 1
(EK146969) 1095456027315 Global-Ocean-Sampling_GS-31-01-01-1... 46 3.3 1
(EJ325452) 1092405906611 Global-Ocean-Sampling_GS-28-01-01-1... 46 3.3 1
(CT071558) Sus scrofa genomic clone PigE-248F18, genomic sur... 46 3.3 1
(AU060402) Dictyostelium discoideum slug cDNA, clone SLJ625. 46 3.3 1
(BM269788) sak20c04.y1 Gm-c1075 Glycine max cDNA clone SOYBE... 46 3.3 1
(BJ411459) Dictyostelium discoideum cDNA clone:ddv4d15, 5' e... 46 3.3 1
(EJ578698) 1092960132301 Global-Ocean-Sampling_GS-29-01-01-1... 40 3.4 2
(AX344624) Sequence 49 from Patent WO0200927. 42 3.5 2
(EK008194) 1092955128255 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.5 2
(EK010082) 1092955162239 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.5 2
(AC015933) Homo sapiens chromosome 18, clone CTD-2023G8, com... 40 3.6 6
(EJ565967) 1092959713638 Global-Ocean-Sampling_GS-29-01-01-1... 40 3.6 2
(ER378808) 1094338526050 Global-Ocean-Sampling_GS-34-01-01-1... 40 3.9 2
(DX546741) GH_MBb0087F22f GH_MBb Gossypium hirsutum genomic ... 44 4.0 2
(ER314543) 1092344130005 Global-Ocean-Sampling_GS-34-01-01-1... 40 4.0 2
(AE017308) Mycoplasma mobile 163K complete genome. 32 4.1 17
(AU053698) Dictyostelium discoideum slug cDNA, clone SLJ502. 40 4.2 2
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 38 4.4 17
(AP008983) Clostridium phage c-st genomic DNA, complete genome. 32 4.5 11
(AY583234) Mycoplasma fermentans strain II-29/1 bacteriophag... 34 4.6 5
(AU053196) Dictyostelium discoideum slug cDNA, clone SLI127. 40 5.2 2
(AC105354) Rattus norvegicus clone CH230-97J10, *** SEQUENCI... 44 5.2 4
(AM180355) Clostridium difficile 630 complete genome. 34 5.3 22
(CT954321) N.leucogenys DNA sequence from clone CH271-86M19. 38 5.3 4
(AB501201) Eulaceura osteria mitochondrial COI, COII, ATP8, ... 44 5.5 2
(AB501193) Hestina divona mitochondrial COI, COII, ATP8, COI... 42 5.5 2
(ER414286) 1095390083256 Global-Ocean-Sampling_GS-34-01-01-1... 32 5.6 3
(AP006536) Lotus japonicus genomic DNA, chromosome 2, clone:... 34 5.6 6
(DL089023) Diagnosis of existing illnesses or that praedispo... 34 5.7 3
(DL089022) Diagnosis of existing illnesses or that praedispo... 34 5.7 3
(DL012388) Diagnosis of existing illnesses or that praedispo... 34 5.7 3
(DL012387) Diagnosis of existing illnesses or that praedispo... 34 5.7 3
(GM624852) Sequence 3374 from Patent EP1942197. 34 5.7 3
(GM624851) Sequence 3373 from Patent EP1942197. 34 5.7 3
(EF494740) Blastocystis sp. NandII mitochondrion, complete g... 32 6.1 6
(AC147212) Pan troglodytes BAC clone RP43-126P16 from chromo... 38 6.1 5
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 32 6.2 22
(FP339583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.3 2
(AC147501) Medicago truncatula chromosome 8 clone mth2-12n2,... 32 6.3 2
(EJ907009) 1093018518330 Global-Ocean-Sampling_GS-30-02-01-1... 36 6.4 3
(EJ150218) 1092343754914 Global-Ocean-Sampling_GS-27-01-01-1... 34 6.5 3
(AY619685) Uncultured gamma proteobacterium eBACHOT4E07 clon... 34 6.6 2
(EJ961306) 1093022004593 Global-Ocean-Sampling_GS-30-02-01-1... 32 6.7 3
(EK455353) 1095468099953 Global-Ocean-Sampling_GS-32-01-01-1... 34 6.7 3
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio... 30 6.8 9
(EJ819629) 1093017532042 Global-Ocean-Sampling_GS-30-02-01-1... 36 6.9 3
(DX523350) GH_MBb0042F08f GH_MBb Gossypium hirsutum genomic ... 32 7.0 4
(EJ232007) 1092404024856 Global-Ocean-Sampling_GS-27-01-01-1... 36 7.2 3
(AC084713) Homo sapiens clone RP11-294P1, WORKING DRAFT SEQU... 44 7.4 8
(AC188074) Macaca mulatta chromosome UNK clone CH250-25H12, ... 38 7.5 5
(DD391900) Method and nucleic acids for the improved treatme... 34 7.6 2
(DD391626) Method and nucleic acids for the improved treatme... 34 7.6 2
(DD209257) test. 34 7.6 2
(DD209129) test. 34 7.6 2
(CQ807156) Sequence 606 from Patent WO2004035803. 34 7.6 2
(CQ806882) Sequence 332 from Patent WO2004035803. 34 7.6 2
(BD452833) Diagnosis of Diseases Associated with tumor suppr... 34 7.6 2
(AX826094) Sequence 346 from Patent WO03072821. 34 7.6 2
(AX825966) Sequence 218 from Patent WO03072821. 34 7.6 2
(AX822454) Sequence 346 from Patent EP1340818. 34 7.6 2
(AX822326) Sequence 218 from Patent EP1340818. 34 7.6 2
(AX795934) Sequence 277 from Patent WO03052135. 34 7.6 2
(AX795818) Sequence 161 from Patent WO03052135. 34 7.6 2
(AX767548) Sequence 196 from Patent WO03044226. 34 7.6 2
(AX767472) Sequence 120 from Patent WO03044226. 34 7.6 2
(AX251312) Sequence 280 from Patent WO0168912. 34 7.6 2
(AX458604) Sequence 150 from Patent WO0246454. 34 7.6 2
(AB360971) Culicoides actoni mitochondrial DNA, large subuni... 36 7.6 4
(DJ060320) Method and nucleic acids for the improved treatme... 34 7.7 2
(DJ060198) Method and nucleic acids for the improved treatme... 34 7.7 2
(CS124667) Sequence 353 from Patent WO2005059172. 34 7.7 2
(CS124545) Sequence 231 from Patent WO2005059172. 34 7.7 2
(DD061452) Methods and nucleic acids for the analysis of he... 34 7.8 2
(DD061306) Methods and nucleic acids for the analysis of he... 34 7.8 2
(AX599014) Sequence 354 from Patent WO02077272. 34 7.8 2
(AX598868) Sequence 208 from Patent WO02077272. 34 7.8 2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 7.9 20
(DJ402708) Methods and nucleic acids for analyses of colo re... 34 7.9 2
(DJ402592) Methods and nucleic acids for analyses of colo re... 34 7.9 2
(CR854985) Zebrafish DNA sequence from clone DKEY-42O17 in l... 40 8.0 2
(AC188785) Glycine tomentella clone gtt1-62b6, complete sequ... 34 8.2 6
(AY583236) Mycoplasma fermentans Bacteriophage phiMFV1, comp... 34 8.2 5
(AB083339) Bombyx mori mitochondrial DNA, complete genome, s... 42 8.2 3
(AF149768) Bombyx mori mitochondrion, complete genome. 42 8.2 3
(AB070264) Bombyx mori mitochondrial DNA, complete genome, s... 42 8.3 3
(EJ892946) 1093018451868 Global-Ocean-Sampling_GS-30-02-01-1... 34 8.3 2
(CP000989) Borrelia duttonii Ly plasmid pl42, complete seque... 36 8.3 4
(AX926713) Sequence 3 from Patent WO03084989. 38 8.3 9
(EJ229415) 1092402559298 Global-Ocean-Sampling_GS-27-01-01-1... 34 8.4 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 30 8.4 18
(EJ313130) 1095403243372 Global-Ocean-Sampling_GS-27-01-01-1... 34 8.4 2
(EJ215481) 1092351084410 Global-Ocean-Sampling_GS-27-01-01-1... 36 8.4 3
(EJ209092) 1092345394368 Global-Ocean-Sampling_GS-27-01-01-1... 36 8.4 3
(FC768547) CBBN449.fwd CBBN Lottia gigantea 3,4,5,6.5d Larva... 32 8.4 2
(AB070263) Bombyx mandarina mitochondrial DNA, complete genome. 42 8.5 3
(EJ034677) 1095454065665 Global-Ocean-Sampling_GS-26-01-01-1... 34 8.6 2
(AC221861) Bos taurus clone CH240-380O14, WORKING DRAFT SEQU... 42 8.9 2
(AY940168) Cyanophage P-SSM4, complete genome. 34 9.0 6
(EJ297069) 1095388051491 Global-Ocean-Sampling_GS-27-01-01-1... 34 9.3 3
(ET930748) CHO_OF253xm11r1.ab1 CHO_OF Nicotiana tabacum geno... 36 9.9 2
>(BJ344309) Dictyostelium discoideum cDNA clone:dda18h01, 3' end,
single read.
Length = 687
Score = 1265 bits (638), Expect(2) = 0.0
Identities = 638/638 (100%)
Strand = Plus / Minus
Query: 516 ttacagcagaccgtgcatatagtgcagttcaattggatgatattaaattttgttacagaa 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttacagcagaccgtgcatatagtgcagttcaattggatgatattaaattttgttacagaa 618
Query: 576 tatttaacaaaaactgcattaccattggtaaagaaatggtttttagttggttttagttta 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatttaacaaaaactgcattaccattggtaaagaaatggtttttagttggttttagttta 558
Query: 636 ggttctgccattttagtcaattatatggcagacgctggtaaagactcaccttacttggct 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggttctgccattttagtcaattatatggcagacgctggtaaagactcaccttacttggct 498
Query: 696 cacgtttcaatttcaaatccaataaatatggtagaatgtacaaagaatctctcttcaacc 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cacgtttcaatttcaaatccaataaatatggtagaatgtacaaagaatctctcttcaacc 438
Query: 756 tatatcaataatttaatttataacaaaggtttagcaaataatttaaaacgtttattccgt 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatatcaataatttaatttataacaaaggtttagcaaataatttaaaacgtttattccgt 378
Query: 816 aaattcgatggccgtttagataaatatgcaaccaaagaacaaattatggctgcccaaacc 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaattcgatggccgtttagataaatatgcaaccaaagaacaaattatggctgcccaaacc 318
Query: 876 attgcagatttcgatgatcttatcacaagtaaaatgtttggcttcgaaactgctcatgat 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 attgcagatttcgatgatcttatcacaagtaaaatgtttggcttcgaaactgctcatgat 258
Query: 936 tattatttagccgctagtagttcaaagagtattcgtaatttagttaaaccaatccttttc 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tattatttagccgctagtagttcaaagagtattcgtaatttagttaaaccaatccttttc 198
Query: 996 atcaatgctatcgatgatccaatcgctccaacttctggtttcccttggaaagattttaaa 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atcaatgctatcgatgatccaatcgctccaacttctggtttcccttggaaagattttaaa 138
Query: 1056 tcaaatccaaatacaatcttatgtgttagtagatggggtggtcatttaggttttatctct 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcaaatccaaatacaatcttatgtgttagtagatggggtggtcatttaggttttatctct 78
Query: 1116 tatgaagatcatatgtcttggtctgataaagctgctgt 1153
||||||||||||||||||||||||||||||||||||||
Sbjct: 77 tatgaagatcatatgtcttggtctgataaagctgctgt 40
Score = 48.1 bits (24), Expect(2) = 0.0
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1154 tgaatatctttcaacttttttaga 1177
||||||||||||||||||||||||
Sbjct: 40 tgaatatctttcaacttttttaga 17
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,667,580,062
Number of extensions: 102941126
Number of successful extensions: 8933875
Number of sequences better than 10.0: 200
Length of query: 1248
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 1224
Effective length of database: 102,084,959,077
Effective search space: 124951989910248
Effective search space used: 124951989910248
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home