Dictyostelium discoideum cDNA Contig-U08154-1

Assembled

Chromosomal Location of Contig-U08154-1

Sequence Contig-U08154-1

AAAAATCTTT TCCCTATTCA TCATTTTATT ATTATTATTT ACAAATTTCA
ATAAATTTAA AATATTGTTA TAAAATGAAA TTAAAATTAA TTTTTTCTTT
ATTTTTAGTA TTGGTTTTTT GTTCACTATT CGTTTTTGGT GATGAAAATG
AAACCGAAGG TCAAGAAAGT AGAATTGATT GTAGATTAGT ACGTTGTATG
GCTGCAAATT GTACCGAAGG TCAAGTACCA TATAAAAAGA AAGGTGAATG
TTGTGAAAGT TGTATGTTAG ATTGTAGTTT GGTAGATTGT TATACTCCAA
AATGTAAAAA GGGTTACTAT TTGAAAAAAC CAGAAGGTCA ATGTTGTCAA
ATTTGTCAAA GAGAATGCAG TGCAATTCAA TGTGGAATTC CAAAATGTGC
ACCAGGATAT ATTTCACAAG TACCAGTTGG TGAATGTTGT CCAACATGTG
TAAAGAAACC AGTTAATCCT TGTGCATTAG TACTTTGTCC AATTGTTGAT
TGTATGATTG GATGGGTCCC TTATAAACCA GAGGGTGAAT GTTGCACAAA
ATGTAAACAA GATTGTACCA CTGTAAAATG TGCAATGCCC AGTATGTGAA
GATGGTGCAA CCCCAACAAA GAACCCAAAT GAGTGTTGCT ACAAATGTCC
ACCAGTAAAT TGTGCAGCTG TTCAATGTCT TGTTCCAAAA TGTAATGCCA
ACGAGTCACT TTACACTCCA CCAGAGAGAT GTTGTCCAAT TTGTAGACCA
AACCCAACAT TAGATTGCAC AAATACTTTA TGTCCAATAG TAGATTGTAT
GATTGGATGG GTACCTTATA AACCAGAAGG TGAATGTTGT GATAGATGTA
AACAAAGACT GCACCCTTGT AAAATGTGCC ATGCCAGTAT GTGAAAGATG
GTTCCAAACC AATCAAAAAC CCAAATGAAT GTTGCTACAA ATGTCCAGCA
GTTGATTGCA GTACCGTTAG ATGTATGAGA CCATTGTGTA ATGAAAATGA
ACATCTTTAC ACACCACCAG GAAAATGTTG TCCAATTTGT AGACCAAATC
CAAATTGCAC CGACGCCATA TGTCCAGCAT GTGTAGGTCA CATTGAACCA
GGTCAATGTT GTCCAACTTG TGATACAATT CCAGTTGGAC CAGATTGTAC
CACTGTAAAA TGTGCCCATG CCCAGTTTGT GAAGATGGTG CAAAAACCAA
CAAAGAATCC AAATGAGTGT TGCTACAAAT GTCCACCAGT AAATTGTGCA
GCTGTTCAAT GTCCTGTTCC AAAATGTAAT GCCAACGAGT CACTTTACAC
TCCACCAGAG AGATGTTGTC CAATTTGTAG ACCAAACCCA GATTGTACTG
GAATTATGTG CCCAGAATGT GTTGGTACAA AATTACCAGG TCAATGTTGC
CCAACATGTG ACTCTATACC AGTTGAAATG GCTTAAAAAA TATACTTAAT
CTTTTCTTTT TTTTTTAAAT ATATAAATAT ATATTAGTAA TTAAATTAAA
AAAAAAAAAA AATTAAATAA AATAATTATT TTAATCAGAA AATAAAAAAA
ATAAAAAAGA TAAAAAAAAA AGATAAAAAT AAACTTTCAA ACTAAATAAG
GGCATTTTTA TTATTTTATT TAATTTAATA

Translated Amino Acid Sequence Contig-U08154-1

KSFPYSSFYYYYLQISINLKYCYKMKLKLIFSLFLVLVFCSLFVFGDENETEGQESRIDC
RLVRCMAANCTEGQVPYKKKGECCESCMLDCSLVDCYTPKCKKGYYLKKPEGQCCQICQR
ECSAIQCGIPKCAPGYISQVPVGECCPTCVKKPVNPCALVLCPIVDCMIGWVPYKPEGEC
CTKCKQDCTTVKCAMPSM*rwcnpnkepk*vllqmstsklcscsmscskm*cqrvtlhst
remlsnl*tkpnirlhkyfmsnsrlydwmgtl*trr*ml**m*tktapl*nvpcqyvkdg
skpiknpneccykcpavdcstvrcmrplcnenehlytppgkccpicrpnpnctdaicpac
vghiepgqccptcdtipvgpdcttvkcahaqfvkmvqkptknpneccykcppvncaavqc
pvpkcnaneslytpperccpicrpnpdctgimcpecvgtklpgqccptcdsipvema*ki
ylifsfffkyiniy**ln*kkkkik*nnyfnqkikkikkikkkdknklsn*irafllfyl
i*

Homology Contig-U08154-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U08154-1 (Contig-U08154-1Q) /CSM_Contig/Conti...  2670  0.0
Contig-U08182-1 (Contig-U08182-1Q) /CSM_Contig/Conti...   468  e-132
Contig-U14359-1 (Contig-U14359-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12017-1 (Contig-U12017-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U10163-1 (Contig-U10163-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U06383-1 (Contig-U06383-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U01683-1 (Contig-U01683-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12865-1 (Contig-U12865-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11893-1 (Contig-U11893-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U14740-1 (Contig-U14740-1Q) /CSM_Contig/Conti...    38  0.029

Homology Contig-U08154-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ390817) Dictyostelium discoideum cDNA clone:dds23g19, 5' ...   896   0.0    3
(BJ362363) Dictyostelium discoideum cDNA clone:ddc21a13, 5' ...   896   0.0    4
(AU062101) Dictyostelium discoideum slug cDNA, clone SLH579.      733   0.0    3
(AU060933) Dictyostelium discoideum slug cDNA, clone SLC293.      626   0.0    4
(AU039746) Dictyostelium discoideum slug cDNA, clone SLG317.      618   0.0    5
(AU039598) Dictyostelium discoideum slug cDNA, clone SLE816.      613   0.0    5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...   539   0.0    7
(AU034847) Dictyostelium discoideum slug cDNA, clone SLE577.      539   0.0    7
(BJ401608) Dictyostelium discoideum cDNA clone:dds23g19, 3' ...   539   0.0    6
(BJ376173) Dictyostelium discoideum cDNA clone:ddc21a13, 3' ...   539   0.0    7

Homology Contig-U08154-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC115592_21(AC115592|pid:none) Dictyostelium discoideum chromoso...    77   1e-16
(Q86XX4) RecName: Full=Extracellular matrix protein FRAS1; Flags...    53   2e-13
BC131820_1(BC131820|pid:none) Homo sapiens Fraser syndrome 1, mR...    53   2e-13
AC131945_1(AC131945|pid:none) Homo sapiens BAC clone RP11-5K24 f...    53   2e-13
BX571800_1(BX571800|pid:none) Zebrafish DNA sequence from clone ...    64   5e-13
A55035(A55035;S45034) cysteine-rich protein CRP1 - earthworm (En...    77   2e-12
YPDOD1(A23754)prestalk D11 protein precursor - slime mold (Dicty...    76   4e-12
AE013599_3395(AE013599|pid:none) Drosophila melanogaster chromos...    69   4e-10
EU000366_1(EU000366|pid:none) Drosophila melanogaster clone RE17...    69   4e-10
AY142132_1(AY142132|pid:none) Giardia intestinalis isolate WB cl...    47   1e-09