Homology Contig-U07417-1 vs DNA
Query= Contig-U07417-1 (Contig-U07417-1Q) /CSM_Contig/Contig-U07417-1Q.Seq.d
(531 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ341998) Dictyostelium discoideum cDNA clone:dda9h01, 3' e... 682 0.0 1
(EK439883) 1095522067240 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.001 2
(CP000937) Francisella philomiragia subsp. philomiragia ATCC... 54 0.006 1
(EJ436551) 1093015283989 Global-Ocean-Sampling_GS-28-01-01-1... 50 0.089 1
(AX145456) Sequence 4178 from Patent WO0134809. 48 0.20 2
(AR486092) Sequence 4178 from patent US 6703492. 48 0.20 2
(AF270138) Staphylococcus epidermidis strain SR1 clone step.... 48 0.20 2
(AX145587) Sequence 4309 from Patent WO0134809. 48 0.35 1
(AR486223) Sequence 4309 from patent US 6703492. 48 0.35 1
(AC230565) Bos taurus clone CH240-505F4, WORKING DRAFT SEQUE... 48 0.35 1
(AC221753) Bos taurus clone CH240-386D9, WORKING DRAFT SEQUE... 48 0.35 1
(EK436796) 1095521059955 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.35 1
(CP000029) Staphylococcus epidermidis RP62A, complete genome. 48 0.35 1
(AF270269) Staphylococcus epidermidis strain SR1 clone step.... 48 0.35 1
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g... 48 0.35 1
(DQ058312) Tetraria compar tRNA-Leu (trnL) gene and trnL-trn... 36 0.76 2
(DQ419864) Tetraria sylvatica tRNA-Leu (trnL) gene and trnL-... 36 0.76 2
(DQ419867) Tetraria picta tRNA-Leu (trnL) gene and trnL-trnF... 36 0.76 2
(DQ419863) Tetraria brachyphylla tRNA-Leu (trnL) gene and tr... 36 0.77 2
(CS351292) Sequence 676 from Patent WO2006013561. 40 0.77 4
(GM048469) Sequence 305 from Patent WO2007026255. 40 0.77 4
(AL023584) Human DNA sequence from clone RP1-67K17 on chromo... 40 0.77 4
(BV808634) pRRL2:Newb:20080411:187479 USMARC Pig Breed SNP D... 46 1.4 1
(AC163492) Mus musculus chromosome 18, clone RP23-411L20, co... 46 1.4 1
(CQ870482) Sequence 903 from Patent WO2004074320. 46 1.4 1
(AC108714) Homo sapiens 3p BAC RP11-146G16 (Roswell Park Can... 46 1.4 1
(AC108707) Homo sapiens chromosome 3q clone RP11-44O19, WORK... 46 1.4 1
(AC100482) Mus musculus clone RP23-141I12, LOW-PASS SEQUENCE... 46 1.4 1
(FP312730) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(CU862049) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(AC074082) Homo sapiens chromosome 11 clone RP11-146G16 map ... 46 1.4 1
(AC181818) Strongylocentrotus purpuratus clone R3-1023L19, W... 46 1.4 1
(EK408925) 1095505112860 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EK129558) 1093003702253 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EK105522) 1092963045234 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(DH137126) Oryzias latipes Fosmid clone:GOLWFno363_d03, forw... 46 1.4 1
(CT299761) Sus scrofa genomic clone CH242-205M11, genomic su... 46 1.4 1
(CT046830) Sus scrofa genomic clone PigE-110B23, genomic sur... 46 1.4 1
(AJ963803) Sus scrofa EST, clone C0007760g15, 3' direction. 46 1.4 1
(AJ960343) Sus scrofa EST, clone C0007760h15, 3' direction. 46 1.4 1
(BU774286) SJEGJD05 SJE Schistosoma japonicum cDNA, mRNA seq... 46 1.4 1
(AM180355) Clostridium difficile 630 complete genome. 46 1.4 1
(BX908798) Parachlamydia-related symbiont UWE25, complete ge... 32 2.3 2
(CU210882) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.3 5
(GC699646) Sequence 14891 from patent US 6812339. 40 3.1 2
(GC697019) Sequence 12264 from patent US 6812339. 40 3.5 2
(AC150783) Medicago truncatula chromosome 6 clone mth2-132h9... 34 3.7 5
(AL365507) Human DNA sequence *** SEQUENCING CANCELLED *** f... 42 3.8 4
(EF710647) Glyptapanteles flavicoxis clone BAC 9N7, complete... 38 4.2 3
(AF482962) Dictyostelium discoideum ABC transporter AbcH.3 (... 36 4.5 3
(EK007568) 1092955119212 Global-Ocean-Sampling_GS-31-01-01-1... 30 4.7 3
(AL358075) Human DNA sequence from clone RP4-533D7 on chromo... 40 4.8 2
(U55370) Caenorhabditis elegans cosmid K03B4, complete seque... 36 5.0 2
(AC118240) Mus musculus chromosome 16, clone RP23-186J5, com... 44 5.5 1
(AC193260) Pan troglodytes BAC clone CH251-364B11 from chrom... 44 5.5 1
(AY920233) Rheum likiangense voucher 1820 trnS-trnG intergen... 44 5.5 1
(AY193549) Lactuca sativa clone TDQ resistance protein RGC2 ... 44 5.5 1
(AY193530) Lactuca sativa clone TDAA resistance protein RGC2... 44 5.5 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 5.5 1
(AM449003) Vitis vinifera contig VV78X054111.6, whole genome... 44 5.5 1
(AF072284) Lactuca sativa RGC2Q gene, partial sequence. 44 5.5 1
(AC235746) Glycine max strain Williams 82 clone GM_WBc0051A0... 44 5.5 1
(AC148759) Oryza sativa Japonica Group chromosome 11 clone O... 44 5.5 1
(AC146573) Medicago truncatula clone mth2-145j1, complete se... 44 5.5 1
(AC136378) Oryza sativa Japonica Group chromosome 11 clone O... 44 5.5 1
(EA694343) Sequence 73222 from patent US 7365185. 44 5.5 1
(AR195524) Sequence 122 from patent US 6350933. 44 5.5 1
(AL391748) Human chromosome 14 DNA sequence BAC R-630G18 of ... 44 5.5 1
(AC106777) Homo sapiens chromosome 5 clone RP11-326M11, comp... 44 5.5 1
(AC007686) Homo sapiens chromosome 14 clones CTD-2289B16, RP... 44 5.5 1
(AC091864) Homo sapiens chromosome 5 clone CTD-2354M24, WORK... 44 5.5 1
(AC231870) Solanum tuberosum chromosome 6 clone RHPOTKEY038C... 44 5.5 1
(AC224801) Bos taurus clone CH240-475N18, WORKING DRAFT SEQU... 44 5.5 1
(AC221767) Bos taurus clone CH240-385J24, WORKING DRAFT SEQU... 44 5.5 1
(AC211072) Solanum lycopersicum chromosome 6 clone C06HBa030... 44 5.5 1
(AC023023) Homo sapiens chromosome 5 clone RP11-195J17 map 5... 44 5.5 1
(ER450790) 1092963848810 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.5 1
(ER435313) 1092963794260 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.5 1
(EK085653) 1092961147696 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.5 1
(EK016994) 1092955244140 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.5 1
(EJ302298) 1095390036412 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.5 1
(ED032564) SBA031_L07.r Sugar beet BAC library USH20 (Code S... 44 5.5 1
(CE328421) tigr-gss-dog-17000333958238 Dog Library Canis lup... 44 5.5 1
(EG304853) MSAM291032_3302_0249 LCM-dissected maize inbred l... 44 5.5 1
(DV007187) CNB245-B11.x1d-t SHGC-CNB Gasterosteus aculeatus ... 44 5.5 1
(BI513243) BB160011B10G10.5 Bee Brain Normalized Library, BB... 44 5.5 1
(FC602013) CAXS13858.fwd CAXS Lottia gigantea from head, foo... 44 5.5 1
(CU855700) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 6.4 2
(AC122621) Rattus norvegicus clone CH230-70D24, WORKING DRAF... 38 6.9 5
(AL096815) Human DNA sequence from clone RP1-310P5 on chromo... 42 8.9 3
(AC107529) Rattus norvegicus clone CH230-153O8, *** SEQUENCI... 32 9.7 2
(AC026611) Homo sapiens chromosome 3 clone RP11-711L14 map 3... 30 9.8 2
(AC023245) Homo sapiens chromosome 8, clone RP11-25D10, comp... 32 9.9 2
(AC151496) Dasypus novemcinctus clone VMRC5-107G20, WORKING ... 32 10.0 2
(AC151447) Dasypus novemcinctus clone VMRC5-156H10, WORKING ... 32 10.0 2
(AC175219) Aotus nancymaae clone CH258-29H23, WORKING DRAFT ... 32 10.0 2
(AC092997) Homo sapiens 3 BAC RP11-711L14 (Roswell Park Canc... 30 10.0 2
>(BJ341998) Dictyostelium discoideum cDNA clone:dda9h01, 3' end,
single read.
Length = 522
Score = 682 bits (344), Expect = 0.0
Identities = 344/344 (100%)
Strand = Plus / Minus
Query: 103 tgttaatagtggtttaataccaattacagctactatgaatagtattttaacacaagagaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgttaatagtggtttaataccaattacagctactatgaatagtattttaacacaagagaa 371
Query: 163 attaaagaatttagaattaaaatttaggtcaatattaaaaggaattttagttattggttc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 attaaagaatttagaattaaaatttaggtcaatattaaaaggaattttagttattggttc 311
Query: 223 aaatctttcagatagtaaagagtttagaaatttatttgaagatatcgttgaaaaagtaat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 aaatctttcagatagtaaagagtttagaaatttatttgaagatatcgttgaaaaagtaat 251
Query: 283 tgaaccattgaaaagaatggaaatggtaatggatgaagttaatcctttcttttatttctt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgaaccattgaaaagaatggaaatggtaatggatgaagttaatcctttcttttatttctt 191
Query: 343 aattgaattattttcaccagaacaattaggtattcattcattaagacatcgtgatcgtgt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aattgaattattttcaccagaacaattaggtattcattcattaagacatcgtgatcgtgt 131
Query: 403 tgttcataattggaaatcatttttagagggtattcgtcgtgtag 446
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tgttcataattggaaatcatttttagagggtattcgtcgtgtag 87
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 524,958,971
Number of extensions: 34190314
Number of successful extensions: 3062404
Number of sequences better than 10.0: 97
Length of query: 531
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 508
Effective length of database: 102,190,702,835
Effective search space: 51912877040180
Effective search space used: 51912877040180
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home