Dictyostelium discoideum cDNA Contig-U07296-1

Assembled

Chromosomal Location of Contig-U07296-1

Sequence Contig-U07296-1

AAATTCGTTG CTTTTAAGAA GAAAAAAAAA AAAAAAAATG AATAGAGTTA
AAGTAAAGAC AATTAATTCA AACTCATGTA AGGGTTTTGA AGGTTTTTCA
AAACATTATC CAAGTGGTTT AAATGGAGTT ATGCAACCAC AAGAATTTGA
ACAAGTTATT AATAGAATTA ATATGTTATC AAAAACTCGT TATCCAAAAA
CAATTTCAAT TCCATTAATC ATTATTTTCC TTGGTATTAT TTTATTCATT
ATTGGTATTG TTAAATTCGA TTGGTCAGTA ATTTCCTCTG GTTTTACAAT
TTTATTAGTT GGTTTTGTAG TTATGGTAGT TATGGTTTGT TTCTTTAGAC
GTAAGGTAAA GAATAATATG CAACCAGCAT TACAAGAAGC AAATAATTAT
TTCGCAGAAA GAAGAATTAC ATTTACTTTT AGAGAGAAAA CAGGTAAACC
AAAAATAGTT AAACAAGGTG CTAATGATAA AGTCGTTAGA AAACATTAAA
CAATATTTAG AAATTAGATT CCCTGCACCA GGTAGTTCCG GTGGTATTTT
AGGTTTTGTT CAAAGTATTT TACCAATTGG AGGTAACCCA CAACCACACT
CACCAAGTGG TCCATCATTC AATTATCAAC CAAATCAAGT TAATGTTAAT
GGCGTTGGTT TCGTACCACC ACCAGTTAAC GTTGCACCAA CAATGAATAA
TGGTAATTTA GAGTTTAATT TAAGTGCACC ATCTGTAGCT CCAAATTTCA
ATATTTCAAT TGATGCTGAA ACTGCATTAA AAGTAACTGG TACTGCTGCT
AAAGGAATTT ATGATGGCTA TAATACTTTT GTATAATAAA AAAATAAAAA
AAATAAAAAA AATAAAAAAA TAAAAAAATA AAAAATAAAA AAAATAAAAA
TAAAGAACCA ATTTTAAAAT TTATTATTAA ATAAAAAAAA AAAAAAAAAA
AA

Translated Amino Acid Sequence Contig-U07296-1

NSLLLRRKKKKKMNRVKVKTINSNSCKGFEGFSKHYPSGLNGVMQPQEFEQVINRINMLS
KTRYPKTISIPLIIIFLGIILFIIGIVKFDWSVISSGFTILLVGFVVMVVMVCFFRRKVK
NNMQPALQEANNYFAERRITFTFREKTGKPKIVKQGANDKVVRKH*tifrn*ipctr*fr
wyfrfcskyftnwr*ptttltkwsiiqlstkss*c*wrwfrttts*rctnne*w*frv*f
kcticsskfqyfn*c*nciksnwycc*rnl*wl*yfciikk*kk*kk*knkkiknkknkn
kepilkfiik*kkkkkk

Homology Contig-U07296-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U07296-1 (Contig-U07296-1Q) /CSM_Contig/Conti...  1584  0.0
Contig-U09531-1 (Contig-U09531-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U04914-1 (Contig-U04914-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U04543-1 (Contig-U04543-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U14197-1 (Contig-U14197-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U13927-1 (Contig-U13927-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U11602-1 (Contig-U11602-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U08866-1 (Contig-U08866-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U08726-1 (Contig-U08726-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti...    34  0.27

Homology Contig-U07296-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AC115581) Dictyostelium discoideum chromosome 2 map complem...   676   0.0    4
(C92493) Dictyostelium discoideum slug cDNA, clone SSE822.        676   0.0    2
(AU072540) Dictyostelium discoideum slug cDNA, clone SSE822.      400   e-113  2
(BJ344742) Dictyostelium discoideum cDNA clone:dda20h11, 3' ...   266   2e-85  2
(AU072021) Dictyostelium discoideum slug cDNA, clone SSD201.      248   3e-61  1
(AU269158) Dictyostelium discoideum vegetative cDNA clone:VS...    94   1e-14  1
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 38   0.087  2
(CE683372) tigr-gss-dog-17000314474793 Dog Library Canis lup...    46   0.43   2
(CP000673) Clostridium kluyveri DSM 555, complete genome.          48   0.64   1
(AP009049) Clostridium kluyveri NBRC 12016 DNA, complete gen...    48   0.64   1

Homology Contig-U07296-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AC115581_10(AC115581|pid:none) Dictyostelium discoideum chromoso...   211   e-102
BC076763_1(BC076763|pid:none) Xenopus laevis cysteine-rich hydro...    34   8.4
AB380614_1(AB380614|pid:none) Macaca fascicularis CHIC2 gene for...    34   8.4
AY893157_1(AY893157|pid:none) Synthetic construct Homo sapiens c...    34   8.4