Homology Contig-U07284-1 vs Protein

Query= Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d
         (1400 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE001439_273(AE001439|pid:none) Helicobacter pylori J99, complet...    40   0.15
A64556(A64556) toxin-like outer membrane protein HP0289 - Helico...    39   0.34
AX044596_1(AX044596|pid:none) Sequence 57 from Patent WO0066722.       39   0.34
AX044722_1(AX044722|pid:none) Sequence 183 from Patent WO0066722.      39   0.34
CP001173_259(CP001173|pid:none) Helicobacter pylori G27, complet...    39   0.45
EU170084_1(EU170084|pid:none) Tribolium castaneum gustatory rece...    36   2.9
AM260522_500(AM260522|pid:none) Helicobacter acinonychis str. Sh...    33   3.3
AF010143_1(AF010143|pid:none) Campylobacter rectus S-layer prote...    35   6.5

>AE001439_273(AE001439|pid:none) Helicobacter pylori J99, complete
            genome.  &AX055208_1(AX055208|pid:none) &C71953(C71953)
          Length = 2902

 Score = 40.4 bits (93), Expect = 0.15
 Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 13/207 (6%)
 Frame = +1

Query: 589  SNGTNSLFYLVNARVSFNKVSISGSISGPFIKAVNCIVTANQFNIISEKNYEI-SYHLIT 765
            SNG++  F   N  V+FN  +I+ S+S   I     +    QFN+ +  + +      IT
Sbjct: 1388 SNGSHLNF---NGAVNFNSANITTSLSSSSIVFKGAVSLRGQFNLSNNSSLDFQGSSAIT 1444

Query: 766  LTESFAYFEN----STIVLSVKSDVKNYFSSNIAIFNPVNSELYLFSNR---ISSNGXXX 924
               +F +++N    S I      D+K   S    + NP NS +    N     S  G
Sbjct: 1445 SNTAFNFYDNAFSQSPITFHQALDIKVPLSLGGNLLNPNNSSVLNLKNSQLVFSDQGSLN 1504

Query: 925  XXXXXXXXXANNNQFQYAPYSVNSYQLVQCD-----YGISRFYGDYQFTSYSDSCQAKIN 1089
                      N N+ +        Y ++Q D     Y    F+G        D   AK
Sbjct: 1505 IANIDLLSDLNGNKNRV-------YNIIQADMNGNWYERINFFGMRINDGIYD---AKNQ 1554

Query: 1090 VLSFWNTDANLLEIIISYLSGVLSIVL 1170
              SF N   N L+I  S+ +  LS+ L
Sbjct: 1555 TYSFTNPLNNALKITESFKNNQLSVTL 1581

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,944,156,482
Number of extensions: 35772632
Number of successful extensions: 99195
Number of sequences better than 10.0: 8
Number of HSP's gapped: 99164
Number of HSP's successfully gapped: 9
Length of query: 466
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 334
Effective length of database: 618,001,159
Effective search space: 206412387106
Effective search space used: 206412387106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)