Dictyostelium discoideum cDNA Contig-U07284-1

Assembled

Chromosomal Location of Contig-U07284-1

Sequence Contig-U07284-1

CAAAAATATG AAAATATTTA ATCTTTTAGT AGTATTACTT TCAATAGTAA
ATATATCACT TGGCCAAATC ACATTTCAAA AATATGTTGA TTTTAATGGT
TATAATCAAC CAAATTGTGG TGCATCAACG GAACCATGTA AATCAATTGA
ATATGTAATT AATCAAATCA AATCATATTC TTATGAGCAA TTTTCAATTG
AAATTTTATT GGGTCGTGGA ACACATCATT CTTTAACACC AACCAATTTA
TATGGTTTAA ATATTACAAT TGGAGCAGCC AACCCAGGAG AATCGGTTCA
ACTTTTAGCA TCATCATCAT TAGGTACAGC ACAATTCACT GTAGACCATT
CAAATTATTA TGATATTATT CCAACAAATA TCGTTTTTAG AGATCTTACT
GTTACTTGTG ATTTATCATA CACTTGGAAT GGTTTACTTT TACAATCAAA
TATTAATTCC TACCAAAATC TATTTTTAAA TGTAAAAACA GAAAATGTAA
TATTTTCATG TGCAAATAGC GATTTTTCAT ATTTTTCAGT TT--------
--ATGGATAA TGTTTCTATT GTTTCTTTAT CATTTGTGTC AAATGGAACA
AACTCTCTCT TTTATTTGGT TAATGCTCGT GTCTCTTTTA ACAAAGTTAG
TATTTCCGGT TCCATAAGTG GTCCATTTAT CAAAGCTGTT AATTGTATTG
TAACTGCCAA TCAATTCAAT ATAATTTCAG AGAAAAACTA TGAAATTTCA
TATCATCTTA TCACTTTAAC AGAATCATTT GCTTACTTTG AAAATAGCAC
TATCGTTTTA TCCGTAAAAT CTGATGTTAA AAATTATTTC TCAAGTAATA
TTGCTATTTT CAATCCAGTA AATTCTGAGC TTTACCTTTT CTCTAACCGT
ATCAGTTCCA ATGGTTCATC AATTGTTTAC TCTCAATCTT CAGATGTATC
AGCAAATAAT AATCAATTCC AATATGCACC TTACAGTGTA AACTCTTATC
AATTGGTCCA ATGTGACTAT GGAATATCAA GATTCTATGG TGATTATCAA
TTCACTTCTT ACTCTGATTC TTGTCAAGCT AAAATTAATG TTTTATCATT
TTGGAATACT GACGCCAACT TACTTGAAAT TATCATATCA TATTTAAGTG
GTGTTCTCTC CATTGTATTG GTTTTCGTTA CTATGTTCAC CATTTCAGCT
ATTGGAAAGT GTTGTAGAAG AAAAAGAAAA GCAATTCAAA AATTAAAAAA
GGAAAAAGAA GAAGAAGCTG CAGAAGCAGC AAAATCACTT TTATCAATCA
ATGATTCTGC ATAGAATAAA AAAAATAAAA TGTACAGTAA TTTATAATAA
TTAAAACTAA AATAAATGTT TTTTTTTTTA AAAAAAAAAA AAAAAAAATT

Translated Amino Acid Sequence Contig-U07284-1

KNMKIFNLLVVLLSIVNISLGQITFQKYVDFNGYNQPNCGASTEPCKSIEYVINQIKSYS
YEQFSIEILLGRGTHHSLTPTNLYGLNITIGAANPGESVQLLASSSLGTAQFTVDHSNYY
DIIPTNIVFRDLTVTCDLSYTWNGLLLQSNINSYQNLFLNVKTENVIFSCANSDFSYFSV
---

---MDNVSIVSLSFVSNGTNSLFYLVNARVSFNKVSISGSISGPFIKAVNCIVTANQFNI
ISEKNYEISYHLITLTESFAYFENSTIVLSVKSDVKNYFSSNIAIFNPVNSELYLFSNRI
SSNGSSIVYSQSSDVSANNNQFQYAPYSVNSYQLVQCDYGISRFYGDYQFTSYSDSCQAK
INVLSFWNTDANLLEIIISYLSGVLSIVLVFVTMFTISAIGKCCRRKRKAIQKLKKEKEE
EAAEAAKSLLSINDSA*nkknkmysnl**lklk*mffflkkkkkk

Homology Contig-U07284-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Conti...  2351  0.0
Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U12025-1 (Contig-U12025-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U06970-1 (Contig-U06970-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05585-1 (Contig-U05585-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U05196-1 (Contig-U05196-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U04643-1 (Contig-U04643-1Q) /CSM_Contig/Conti...    38  0.025
Contig-U12804-1 (Contig-U12804-1Q) /CSM_Contig/Conti...    36  0.099
Contig-U09569-1 (Contig-U09569-1Q) /CSM_Contig/Conti...    36  0.099

Homology Contig-U07284-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ428232) Dictyostelium discoideum cDNA clone:ddv11o05, 3' ...  1289   0.0    1
(BJ410097) Dictyostelium discoideum cDNA clone:ddv11o05, 5' ...  1070   0.0    1
(AU270581) Dictyostelium discoideum vegetative cDNA clone:VS...   910   0.0    1
(AU261631) Dictyostelium discoideum vegetative cDNA clone:VS...   751   0.0    3
(AU270582) Dictyostelium discoideum vegetative cDNA clone:VS...   359   e-113  3
(EJ867463) 1093018289739 Global-Ocean-Sampling_GS-30-02-01-1...    46   4e-04  2
(EJ763243) 1092963155076 Global-Ocean-Sampling_GS-30-02-01-1...    46   4e-04  2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    36   0.009  19
(BM781300) MLN1_6_A06.g1_A009 Mesenteric lymph node (MLN1) E...    38   0.012  3
(FP016181) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.019  7

Homology Contig-U07284-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AE001439_273(AE001439|pid:none) Helicobacter pylori J99, complet...    40   0.15
A64556(A64556) toxin-like outer membrane protein HP0289 - Helico...    39   0.34
AX044596_1(AX044596|pid:none) Sequence 57 from Patent WO0066722.       39   0.34
AX044722_1(AX044722|pid:none) Sequence 183 from Patent WO0066722.      39   0.34
CP001173_259(CP001173|pid:none) Helicobacter pylori G27, complet...    39   0.45
EU170084_1(EU170084|pid:none) Tribolium castaneum gustatory rece...    36   2.9
AM260522_500(AM260522|pid:none) Helicobacter acinonychis str. Sh...    33   3.3
AF010143_1(AF010143|pid:none) Campylobacter rectus S-layer prote...    35   6.5