Homology Contig-U06738-1 vs DNA
Query= Contig-U06738-1 (Contig-U06738-1Q) /CSM_Contig/Contig-U06738-1Q.Seq.d
(260 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU265628) Dictyostelium discoideum vegetative cDNA clone:VS... 198 6e-61 2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 198 2e-58 2
(AU265629) Dictyostelium discoideum vegetative cDNA clone:VS... 70 4e-08 1
(AZ522935) 213PbE01 Pb MBN #21 Plasmodium berghei genomic 3'... 42 0.034 2
(FF320086) 280405843 Pea aphid whole body normalized full le... 38 0.13 2
(AC187519) Pan troglodytes BAC clone CH251-634N6 from chromo... 48 0.16 1
(AC146126) Pan troglodytes BAC clone RP43-23E20 from chromos... 48 0.16 1
(AC073125) Homo sapiens BAC clone RP11-636L15 from 7, comple... 48 0.16 1
(AC136302) Homo sapiens chromosome 15 clone CTD-2556C14 map ... 48 0.16 1
(FP236812) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.16 1
(AC010214) Drosophila melanogaster, chromosome 2L, region 34... 44 0.39 2
(AU088485) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 34 0.48 2
(BX323076) Zebrafish DNA sequence from clone DKEY-106A24 in ... 46 0.65 1
(AC127262) Mus musculus BAC clone RP24-326H8 from chromosome... 46 0.65 1
(AC141904) Rattus norvegicus clone CH230-380G1, WORKING DRAF... 46 0.65 1
(AC127447) Rattus norvegicus clone CH230-35M9, *** SEQUENCIN... 46 0.65 1
(AC126726) Rattus norvegicus clone CH230-6A21, *** SEQUENCIN... 46 0.65 1
(AC119490) Rattus norvegicus clone CH230-509B6, *** SEQUENCI... 46 0.65 1
(AC114871) Rattus norvegicus clone CH230-51G3, WORKING DRAFT... 46 0.65 1
(AC112779) Rattus norvegicus clone CH230-1G12, WORKING DRAFT... 46 0.65 1
(AC108280) Rattus norvegicus clone CH230-69G18, *** SEQUENCI... 46 0.65 1
(AC103046) Rattus norvegicus clone CH230-224A8, *** SEQUENCI... 46 0.65 1
(AC097944) Rattus norvegicus clone CH230-178M18, WORKING DRA... 46 0.65 1
(BZ118881) CH230-422N17.TJ CHORI-230 Segment 2 Rattus norveg... 46 0.65 1
(CX511865) JGI_XZG57045.rev NIH_XGC_tropGas7 Xenopus (Silura... 46 0.65 1
(CN104719) EC2CAA26BF03.b1 Xenopus tropicalis xthr plasmid l... 46 0.65 1
(BX649608) Zebrafish DNA sequence from clone CH211-117L17 in... 38 0.88 4
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 38 1.3 2
(CK239940) AGENCOURT_16981744 NCI_CGAP_ZKid1 Danio rerio cDN... 40 1.9 2
(ER503868) 1093015413395 Global-Ocean-Sampling_GS-35-01-01-1... 38 1.9 2
(EJ829844) 1093017576684 Global-Ocean-Sampling_GS-30-02-01-1... 38 2.0 2
(EJ900074) 1093018485120 Global-Ocean-Sampling_GS-30-02-01-1... 38 2.1 2
(CR759881) Zebrafish DNA sequence from clone CH211-165K16 in... 44 2.6 1
(BX511124) Zebrafish DNA sequence from clone CH211-260P9 in ... 44 2.6 1
(BX470178) Zebrafish DNA sequence from clone CH211-285K18 in... 44 2.6 1
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 44 2.6 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 44 2.6 1
(AC144467) Papio anubis clone RP41-263A21, WORKING DRAFT SEQ... 44 2.6 1
(FP102767) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.6 1
(CU694582) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.6 1
(AC223760) Bos taurus clone CH240-458C15, WORKING DRAFT SEQU... 44 2.6 1
(AC201809) Zea mays chromosome 3 clone CH201-249O16; ZMMBBc0... 44 2.6 1
(AC019900) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 2.6 1
(FH981295) CHO_OF6829xg14f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 2.6 1
(FH491112) CHO_OF4518xc06f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 2.6 1
(FH450933) CHO_OF4715xc04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 2.6 1
(FH418445) CHO_OF4885xg18r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 2.6 1
(EJ828812) 1093017572726 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.6 1
(AM666873) Entamoeba terrapinae GSS, clone terra118e05.q1k. 44 2.6 1
(DU897924) 415333 Tomato HindIII BAC Library Solanum lycoper... 44 2.6 1
(EH263916) JGI_CZAA1664.rev CZAA Phakopsora pachyrhizi TW72-... 44 2.6 1
(EH254897) JGI_ACAC17572.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH253078) JGI_ACAC2343.rev ACAC Phakopsora pachyrhizi TW72-... 44 2.6 1
(EH251698) JGI_ACAC404.rev ACAC Phakopsora pachyrhizi TW72-1... 44 2.6 1
(EH249819) JGI_ACAC13805.fwd ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH249604) JGI_ACAC14471.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH249549) JGI_ACAC13573.fwd ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH249280) JGI_ACAC17211.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH245800) JGI_ACAC15321.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH245017) JGI_ACAC11538.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH241170) JGI_ACAC1704.rev ACAC Phakopsora pachyrhizi TW72-... 44 2.6 1
(EH240008) JGI_ACAC20135.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH239355) JGI_ACAC19254.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH238332) JGI_ACAC10260.fwd ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(EH236785) JGI_ACAC18956.rev ACAC Phakopsora pachyrhizi TW72... 44 2.6 1
(DB839228) Nilaparvata lugens mRNA, EST clone:NLTH5484, 5' e... 44 2.6 1
(FK888421) EST_crog_evm_854758 crog_evm Caligus rogercressey... 44 2.6 1
(FM251104) Caenorhabditis elegans EST, clone H03_ce5.trans.... 40 3.4 2
(CU469298) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.2 2
(AC093902) Homo sapiens BAC clone RP11-732B24 from 4, comple... 32 4.8 2
(AC007733) Homo sapiens clone RP11-82A1, WORKING DRAFT SEQUE... 38 4.9 2
(AC226297) Monodelphis domestica clone VMRC18-296B1, WORKING... 38 5.0 2
(AC115256) Rattus norvegicus clone CH230-39J16, *** SEQUENCI... 42 5.6 2
(AC103676) Homo sapiens chromosome 18, clone CTD-3223E7, com... 36 5.9 2
(GD197334) G1045P370FH22.T1 Aplysia californica Pooled Norma... 32 6.5 2
(EI377160) POTDA51TR Solanum tuberosum RHPOTKEY BAC ends Sol... 30 6.5 2
(DK966233) Papilio xuthus mRNA, clone: PxutEST_HY5b03, 5' en... 32 6.8 2
(CU928664) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 6.9 4
(AC112874) Rattus norvegicus clone CH230-228J8, *** SEQUENCI... 38 7.0 2
(DW276985) UI-S-GU0-acz-l-04-0-UI.s1 UI-S-GU0 Euprymna scolo... 34 7.1 2
(BX324157) Zebrafish DNA sequence from clone DKEY-15N1 in li... 38 7.7 2
(CT027582) Zebrafish DNA sequence from clone CH211-214O2 in ... 38 7.9 3
(AM447846) Vitis vinifera contig VV78X038240.29, whole genom... 38 8.3 2
(FH606800) CHO_OF4070xk18r1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 8.3 2
(BX784028) Zebrafish DNA sequence from clone DKEY-40C11 in l... 36 9.2 3
(AM470576) Vitis vinifera contig VV78X036848.4, whole genome... 34 9.5 2
(AC215371) Solanum lycopersicum chromosome 2 clone C02HBa005... 38 9.9 3
>(AU265628) Dictyostelium discoideum vegetative cDNA clone:VSF691,
5' end single read.
Length = 261
Score = 198 bits (100), Expect(2) = 6e-61
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 132 catacaagcacacactcacacttttataatattgtggtacaatattgcattattatattt 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 catacaagcacacactcacacttttataatattgtggtacaatattgcattattatattt 191
Query: 192 attattttgatacaacaccacactaaatatactacaaaaa 231
||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 attattttgatacaacaccacactaaatatactacaaaaa 231
Score = 69.9 bits (35), Expect(2) = 6e-61
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 16 tactaattttcaatcaaatattatttcattgtgtg 50
|||||||||||||||||||||||||||||||||||
Sbjct: 16 tactaattttcaatcaaatattatttcattgtgtg 50
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 227,354,798
Number of extensions: 16887003
Number of successful extensions: 1818528
Number of sequences better than 10.0: 90
Length of query: 260
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 237
Effective length of database: 102,190,702,835
Effective search space: 24219196571895
Effective search space used: 24219196571895
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
Dictyostelium discoideum cDNA Project Home