Homology Contig-U06430-1 vs DNA
Query= Contig-U06430-1 (Contig-U06430-1Q) /CSM_Contig/Contig-U06430-1Q.Seq.d
(554 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU262424) Dictyostelium discoideum vegetative cDNA clone:VS... 391 0.0 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 391 0.0 2
(EK169391) 1095458068704 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.073 2
(EK167329) 1095458059116 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.37 1
(EJ542210) 1092955392235 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.74 2
(EJ559381) 1092959535858 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.78 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.93 7
(EK413716) 1095505926832 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EK402389) 1095469545207 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EK206910) 1095460077730 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EK138208) 1095454029187 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EK080131) 1092961097702 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EK079872) 1092961092710 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(EK023871) 1092955349986 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.5 1
(CG922658) MBEAK80TFB mth2 Medicago truncatula genomic clone... 46 1.5 1
(EC430960) 165364930 Sea Urchin Testis cDNA library Strongyl... 46 1.5 1
(CX243899) NMA02656 Mus Musculus Lateral Ventricle Wall C57B... 46 1.5 1
(BI271815) NF019G01FL1F1007 Developing flower Medicago trunc... 46 1.5 1
(BF640280) NF041F08IN1F1074 Insect herbivory Medicago trunca... 46 1.5 1
(BE326195) NF086F12ST1F1096 Developing stem Medicago truncat... 46 1.5 1
(CP000447) Shewanella frigidimarina NCIMB 400, complete genome. 34 2.3 2
(AZ547496) ENTGI94TR Entamoeba histolytica Sheared DNA Entam... 38 2.9 2
(EK285731) 1095462311807 Global-Ocean-Sampling_GS-31-01-01-1... 38 3.0 2
(EJ044349) 1095454111818 Global-Ocean-Sampling_GS-26-01-01-1... 34 3.8 2
(EK083718) 1092961126790 Global-Ocean-Sampling_GS-31-01-01-1... 34 3.8 2
(CR847971) Zebrafish DNA sequence from clone CH211-147M20 in... 44 5.7 1
(BV498737) S217P60232RH11.T0 Noemie Pan troglodytes troglody... 44 5.7 1
(BV454816) pzm42b06.g1 Clint Pan troglodytes verus STS genom... 44 5.7 1
(BC149192) Bos taurus cDNA clone IMAGE:8491746. 44 5.7 1
(AL021812) Human DNA sequence from clone LL0XNC01-86H4 on ch... 44 5.7 1
(AC150303) Papio anubis clone RP41-211H10, WORKING DRAFT SEQ... 44 5.7 1
(AC149048) Papio anubis clone RP41-292A12, WORKING DRAFT SEQ... 44 5.7 1
(CU469434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(CU062404) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(AC209591) Chlorocebus aethiops clone CH252-120F18, WORKING ... 44 5.7 1
(AC201236) Strongylocentrotus purpuratus clone R3-15K12, WOR... 44 5.7 1
(AC193720) Colobus guereza clone CH272-451F1, WORKING DRAFT ... 44 5.7 1
(AC181713) Strongylocentrotus purpuratus clone R3-1039K18, W... 44 5.7 1
(AC176161) Strongylocentrotus purpuratus clone R3-2O17, WORK... 44 5.7 1
(AC171637) Macaca mulatta clone CH250-531E22, WORKING DRAFT ... 44 5.7 1
(AC169989) Macaca mulatta clone CH250-2M7, WORKING DRAFT SEQ... 44 5.7 1
(ER498204) 1093015355936 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.7 1
(EI082055) hgy0006df06.b1 hgy Oryza officinalis genomic clon... 44 5.7 1
(CZ216807) AIAA-aaf22e15.g1 Ancylostoma caninum whole genome... 44 5.7 1
(ES346576) u4g16ca.f1 cattle subcutaneous adipose tissue cDN... 44 5.7 1
(EH210519) LB0335.CR_L23 GC_BGC-33 Bos taurus cDNA clone IMA... 44 5.7 1
(EH157814) LB01364.CR_P19 GC_BGC-13 Bos taurus cDNA clone IM... 44 5.7 1
(EE957776) J41371A FNM Bos taurus cDNA clone J4137 3', mRNA ... 44 5.7 1
(EE860680) 010914OSTA102058HT OSTA Ovis aries cDNA, mRNA seq... 44 5.7 1
(EE775454) 030729OM1351014013HT OM135 Ovis aries cDNA, mRNA ... 44 5.7 1
(EE773744) 020709OFM1028062HT OFM1 Ovis aries cDNA, mRNA seq... 44 5.7 1
(EE758068) 020605OCS411017066HT OCS4 Ovis aries cDNA, mRNA s... 44 5.7 1
(EE757742) 020605OCS411004051HT OCS4 Ovis aries cDNA, mRNA s... 44 5.7 1
(EE757420) 020605OCS411006067HT OCS4 Ovis aries cDNA, mRNA s... 44 5.7 1
(EE379469) LB03054.CR_N01 GC_BGC-30 Bos taurus cDNA clone IM... 44 5.7 1
(EE369916) LB029112.CR_C11 GC_BGC-29 Bos taurus cDNA clone I... 44 5.7 1
(EE365638) LB02973.CR_M23 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(EE364658) LB02967.CR_L03 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(EE363311) LB029100.CR_G13 GC_BGC-29 Bos taurus cDNA clone I... 44 5.7 1
(EE356265) LB02955.CR_G20 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(EE353950) LB02948.CR_A22 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(EE252139) LB0238.CR_P20 GC_BGC-23 Bos taurus cDNA clone IMA... 44 5.7 1
(EE237266) LB0217.CR_C14 GC_BGC-21 Bos taurus cDNA clone IMA... 44 5.7 1
(EE234634) LB02122.CR_L01 GC_BGC-21 Bos taurus cDNA clone IM... 44 5.7 1
(EE232899) LB02115.CR_N20 GC_BGC-21 Bos taurus cDNA clone IM... 44 5.7 1
(EB103281) Hh_ystG_56E04_T3 1 day-old yolk-sac larvae(trunk)... 44 5.7 1
(DY515520) sh3P0031I22_F.ab1 adult sheep fracture callus 10d... 44 5.7 1
(DY508798) sh3P0010H18_F.ab1 adult sheep fracture callus 10d... 44 5.7 1
(DY504087) sh2P0049F04_F.ab1 adult sheep fracture callus 7d ... 44 5.7 1
(DY502969) sh2P0045H20_F.ab1 adult sheep fracture callus 7d ... 44 5.7 1
(DY500202) sh2P0036P17_F.ab1 adult sheep fracture callus 7d ... 44 5.7 1
(DY495721) sh2P0016N06_F.ab1 adult sheep fracture callus 7d ... 44 5.7 1
(DY493437) sh2P0009G14_F.ab1 adult sheep fracture callus 7d ... 44 5.7 1
(DY484309) sh1-bng21_l0.s2 adult sheep fracture callus pool ... 44 5.7 1
(DY484163) sh1-bmm24_l0.s2 adult sheep fracture callus pool ... 44 5.7 1
(DY483453) sh1-bjl01_l0.s2 adult sheep fracture callus pool ... 44 5.7 1
(DY478130) sh1-aki03_l0.s2 adult sheep fracture callus pool ... 44 5.7 1
(DY475789) sh1-aan14_l0.s2 adult sheep fracture callus pool ... 44 5.7 1
(DY475700) sh1-aai14_l0.s2 adult sheep fracture callus pool ... 44 5.7 1
(DY167511) 000715BINA002418HT BINA Bos taurus cDNA 5', mRNA ... 44 5.7 1
(DY102408) 001023BUTA004126HT BUTA Bos taurus cDNA 5', mRNA ... 44 5.7 1
(DY095836) 000821BEMN999087HT BEMN Bos taurus cDNA 5', mRNA ... 44 5.7 1
(DV924791) LB0296.CR_G04 GC_BGC-29 Bos taurus cDNA clone IMA... 44 5.7 1
(DV920724) LB02922.CR_N07 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(DV917915) LB02911.CR_G04 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(DV917539) LB02910.CR_D01 GC_BGC-29 Bos taurus cDNA clone IM... 44 5.7 1
(DV905004) LB0212.CR_C15 GC_BGC-21 Bos taurus cDNA clone IMA... 44 5.7 1
(DV781781) Hw_FAT_19_050524_H12 Bos taurus CF-24-HW fat cDNA... 44 5.7 1
(DT844552) LB004103.CR_M07 GC_BGC-04 Bos taurus cDNA clone I... 44 5.7 1
(DT812753) LB01619.CR_H05 GC_BGC-16 Bos taurus cDNA clone IM... 44 5.7 1
(DT723115) LB0142.CR_L22 GC_BGC-14 Bos taurus cDNA clone IMA... 44 5.7 1
(DN642522) UMC-bof_0B01-015-a06 Ovarian Follicle bof Bos tau... 44 5.7 1
(AU231532) Bos taurus cDNA clone:Cln425, 3' end, expressed i... 44 5.7 1
(CV983590) UMC-bof_0A02-004-f08 Ovarian follicle pre-ovulato... 44 5.7 1
(CV982713) UMC-bmix_0B02-001-d08 Day 3 Corpus Luteum bmix Bo... 44 5.7 1
(CV982091) UMC-bmix_0A02-009-f07 Day 3 Corpus Luteum bmix Bo... 44 5.7 1
(AM037243) Bos indicus 3' EST, clone C0007404c22. 44 5.7 1
(AM036719) Bos indicus 5' EST, clone C0007404c22. 44 5.7 1
(AM019109) Bos taurus 5' EST, clone C0007418h10. 44 5.7 1
(AM018288) Bos taurus 3' EST, clone C0007418h10. 44 5.7 1
(CK965146) 4080294 BARC 9BOV Bos taurus cDNA clone 9BOV18_K0... 44 5.7 1
(CK849288) 972171 BARC 5BOV Bos taurus cDNA 3', mRNA sequence. 44 5.7 1
(AJ814448) Bos sp. EST, clone C0005207c11. 44 5.7 1
(AJ695585) Bos taurus EST, clone KN261-055_F02. 44 5.7 1
(AJ690404) Bos taurus EST, clone KN261-053_K14. 44 5.7 1
(AJ667967) Sus scrofa EST, clone C0000044_M09. 44 5.7 1
(CF931080) CF--06-R-C10 Bos taurus CF-24-HW cDNA library Bos... 44 5.7 1
(CF118005) fs156.z1 fs 103-105d fetal sheep skin library Ovi... 44 5.7 1
(CB451986) 706806 MARC 6BOV Bos taurus cDNA 5', mRNA sequence. 44 5.7 1
(BM429159) 1A11H04a Bovine Mixed Adipose cDNA library Bos ta... 44 5.7 1
(BI774538) 466699 MARC 1BOV Bos taurus cDNA 5', mRNA sequence. 44 5.7 1
(BE487280) 175941 BARC 5BOV Bos taurus cDNA 5', mRNA sequence. 44 5.7 1
(GO775047) 010609OMNC004203HT OMNC Ovis aries cDNA 5', mRNA ... 44 5.7 1
(GO762004) 010609OMNC004208HT OMNC Ovis aries cDNA 5', mRNA ... 44 5.7 1
(GO580712) Bs_Sus_19B04_M13R EMBRAPA-UFV Brazilian F2 (Holst... 44 5.7 1
(FN003640) Petunia axillaris subsp. axillaris EST, clone dr0... 44 5.7 1
(FD698058) EST01599 GC_BGC-23 Bos taurus cDNA clone GC_BGC-2... 44 5.7 1
(AW463762) BP230013B20A8 Soares normalized bovine placenta B... 44 5.7 1
(EV636697) LB02349.CR_C21 GC_BGC-23 Bos taurus cDNA clone IM... 44 5.7 1
(EV612978) LB011114.CR.1_O13 GC_BGC-11 Bos taurus cDNA clone... 44 5.7 1
(AE017194) Bacillus cereus ATCC 10987, complete genome. 44 5.7 1
(BP526056) Nicotiana tabacum cDNA, clone: BY10758, primer: M... 36 7.1 2
(ED688854) GM_WBb0025C21.f GM_WBb Glycine max genomic clone ... 38 8.4 2
(EK020041) 1092955269911 Global-Ocean-Sampling_GS-31-01-01-1... 32 8.9 3
(GC702147) Sequence 17392 from patent US 6812339. 38 9.1 2
(GC697338) Sequence 12583 from patent US 6812339. 38 9.1 2
(ED704887) GM_WBb0049E15.r GM_WBb Glycine max genomic clone ... 38 9.3 2
>(AU262424) Dictyostelium discoideum vegetative cDNA clone:VSC241,
3' end single read.
Length = 555
Score = 391 bits (197), Expect(2) = 0.0
Identities = 197/197 (100%)
Strand = Plus / Plus
Query: 1 tgggcacatattttagtatatgaacaaaccaattcaactttaaataatctttggaaatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgggcacatattttagtatatgaacaaaccaattcaactttaaataatctttggaaatgg 60
Query: 61 cgtaaaattttggcaactaaaattcaaccaaaagtaaccgaagctatcttatcagtctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtaaaattttggcaactaaaattcaaccaaaagtaaccgaagctatcttatcagtctat 120
Query: 121 ggtaatcatatacttaatagttggggtggaaattatcgtaaagctataaatcaactattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtaatcatatacttaatagttggggtggaaattatcgtaaagctataaatcaactattt 180
Query: 181 gatatctatacaaaatc 197
|||||||||||||||||
Sbjct: 181 gatatctatacaaaatc 197
Score = 301 bits (152), Expect(2) = 0.0
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 309 taatgaaaaaggacaattatcaatggatcaaaaaagtttaattttatcatcaattggtag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taatgaaaaaggacaattatcaatggatcaaaaaagtttaattttatcatcaattggtag 368
Query: 369 tgatattttatttgaatcaccaaatactttaaatcaattaaaatctttacaaactgatat 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgatattttatttgaatcaccaaatactttaaatcaattaaaatctttacaaactgatat 428
Query: 429 aaaattaccaacaatttcaaataatgatgaag 460
||||||||||||||||||||||||||||||||
Sbjct: 429 aaaattaccaacaatttcaaataatgatgaag 460
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 527,863,406
Number of extensions: 31580837
Number of successful extensions: 2559165
Number of sequences better than 10.0: 128
Length of query: 554
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 531
Effective length of database: 102,190,702,835
Effective search space: 54263263205385
Effective search space used: 54263263205385
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home