Homology Contig-U06402-1 vs DNA
Query= Contig-U06402-1 (Contig-U06402-1Q) /CSM_Contig/Contig-U06402-1Q.Seq.d
(819 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU263573) Dictyostelium discoideum vegetative cDNA clone:VS... 856 0.0 4
(AU268864) Dictyostelium discoideum vegetative cDNA clone:VS... 781 0.0 2
(AU262243) Dictyostelium discoideum vegetative cDNA clone:VS... 609 0.0 3
(AU263053) Dictyostelium discoideum vegetative cDNA clone:VS... 638 0.0 2
(AU263572) Dictyostelium discoideum vegetative cDNA clone:VS... 856 0.0 3
(AU268863) Dictyostelium discoideum vegetative cDNA clone:VS... 908 0.0 2
(CP000439) Francisella tularensis subsp. novicida U112, comp... 50 0.14 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 32 0.30 8
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 0.38 9
(EK323791) 1095462438055 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.40 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.49 11
(ET069548) QM0AAA2DD11FM1 CCL1 Citrus clementina genomic clo... 48 0.55 1
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 0.97 9
(EX606583) 255357268 Pea aphid whole body normalized full le... 38 1.3 2
(FF327811) 280435729 Pea aphid whole body normalized full le... 38 1.4 2
(FF305998) 279364671 Pea aphid whole body normalized full le... 38 1.4 2
(ER438877) 1092963805846 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.4 2
(FF298670) 279326726 Pea aphid whole body normalized full le... 38 1.4 2
(EK385403) 1095469480809 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.5 2
(ER550603) 1093016227376 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.5 2
(GO119608) CAGA19129.rev CAGA Alvinella pompejana Normalized... 34 1.5 2
(GO222790) CAGB3569.rev CAGB Alvinella pompejana Normalized ... 34 1.5 2
(GO102938) CAFZ4577.rev CAFZ Alvinella pompejana Incyte regu... 34 1.5 2
(BM164876) EST567399 PyBS Plasmodium yoelii yoelii cDNA clon... 36 1.5 2
(U40799) Caenorhabditis elegans cosmid F42C5, complete seque... 32 1.8 4
(CR450704) Zebrafish DNA sequence from clone DKEY-65O14 in l... 46 2.2 1
(AJ251225) Bungarus multicinctus partial bl1 gene for beta-b... 46 2.2 1
(BC148415) Synthetic construct Mus musculus clone IMAGE:1000... 46 2.2 1
(AC119967) Mus musculus chromosome 10, clone RP24-473K14, co... 46 2.2 1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 46 2.2 1
(AP004268) Oryza sativa Japonica Group genomic DNA, chromoso... 46 2.2 1
(AM473505) Vitis vinifera contig VV78X263284.3, whole genome... 46 2.2 1
(AM451061) Vitis vinifera contig VV78X160277.5, whole genome... 46 2.2 1
(GP406836) Sequence 53568 from patent US 7511127. 46 2.2 1
(GP120011) Sequence 53568 from patent US 7468248. 46 2.2 1
(AC098586) Homo sapiens BAC clone RP11-109F18 from 4, comple... 46 2.2 1
(AC162312) Mus musculus clone RP23-453L16, WORKING DRAFT SEQ... 46 2.2 1
(AC084840) Homo sapiens chromosome 4 clone CTD-2120P15 map 4... 46 2.2 1
(AC084810) Homo sapiens chromosome 4 clone CTD-2518O9 map 4,... 46 2.2 1
(AC060815) Homo sapiens chromosome 4 clone RP11-109F18 map 4... 46 2.2 1
(AC175679) Bos taurus clone CH240-381L3, WORKING DRAFT SEQUE... 46 2.2 1
(AC172846) Bos taurus clone CH240-267A2, WORKING DRAFT SEQUE... 46 2.2 1
(AC163933) Bos taurus clone CH240-111E14, WORKING DRAFT SEQU... 46 2.2 1
(EH537670) FDR202-P00005-DEPE-F_H06 FDR202 Danio rerio cDNA ... 46 2.2 1
(FK748225) av01025l02r1.1 Symbiotic sea anemone (Anemonia vi... 46 2.2 1
(FK733073) av01027g09r1.1 Symbiotic sea anemone (Anemonia vi... 46 2.2 1
(CP001205) Borrelia burgdorferi ZS7, complete genome. 36 3.1 11
(AE000783) Borrelia burgdorferi B31, complete genome. 36 3.2 11
(AC115202) Rattus norvegicus NOVECTOR CH230-46N13 (Children... 42 3.3 4
(AC011574) Homo sapiens clone RP11-12I18, WORKING DRAFT SEQU... 34 3.7 5
(EK037999) 1092959485344 Global-Ocean-Sampling_GS-31-01-01-1... 40 5.1 2
(ED654797) GM_WBa0073C04.r GM_WBa Glycine max genomic clone ... 38 5.3 2
(AM643174) Entamoeba dispar GSS, clone dispar104e07.q1k. 38 5.4 2
(FJ478177) Enicospilus sp. MD-2008 mitochondrion, partial ge... 32 5.5 4
(GO210064) CAGB23013.fwd CAGB Alvinella pompejana Normalized... 34 5.6 2
(GO186750) CAGB10902.rev CAGB Alvinella pompejana Normalized... 34 5.6 2
(GO149134) CAGA33747.rev CAGA Alvinella pompejana Normalized... 34 5.6 2
(GO224412) CAGB4731.rev CAGB Alvinella pompejana Normalized ... 34 5.6 2
(GO133432) CAGA25664.rev CAGA Alvinella pompejana Normalized... 34 5.7 2
(GO231167) CAGB7931.rev CAGB Alvinella pompejana Normalized ... 34 5.7 2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 6.2 13
(FE740226) EST_tthy_evl_884055 tthy_evl Thymallus thymallus ... 42 6.4 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 7.3 10
(CU570983) Zebrafish DNA sequence from clone CH73-208G10 in ... 32 7.6 5
(CP000395) Borrelia afzelii PKo, complete genome. 42 8.2 11
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 8.5 18
(EL929916) EST1546 ARS-CICGRU ONmgEST Ostrinia nubilalis cDN... 38 8.6 2
(AM050154) Bungarus multicinctus b6 chain gene for beta-bung... 44 8.6 1
(AM050153) Bungarus multicinctus b5 chain gene for beta-bung... 44 8.6 1
(BV322628) S236P6483RB3.T0 AlaskanMalamute Canis familiaris ... 44 8.6 1
(AC157211) Mus musculus chromosome 1, clone RP23-204C6, comp... 44 8.6 1
(AM446754) Vitis vinifera contig VV78X081576.1, whole genome... 44 8.6 1
(CS741857) Sequence 9853 from Patent WO2005083127. 44 8.6 1
(CT737213) Pig DNA sequence from clone CH242-10P9 on chromos... 44 8.6 1
(AL132639) Human chromosome 14 DNA sequence BAC R-407N17 of ... 44 8.6 1
(AL109628) Human chromosome 14 DNA sequence BAC R-545M17 of ... 44 8.6 1
(AC073941) Homo sapiens chromosome 15 clone RP11-627D16 map ... 44 8.6 1
(AC160069) Bos taurus clone CH240-82J22, WORKING DRAFT SEQUE... 44 8.6 1
(AC140773) Medicago truncatula clone mth2-22b21, WORKING DRA... 44 8.6 1
(AC116055) Rattus norvegicus clone CH230-11H12, *** SEQUENCI... 44 8.6 1
(CU915368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.6 1
(CU618334) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.6 1
(AC087756) Homo sapiens chromosome 15 clone RP11-627D16 map ... 44 8.6 1
(CU076071) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.6 1
(AC231360) Medicago truncatula clone mth2-38a1, WORKING DRAF... 44 8.6 1
(AC224927) Bos taurus clone CH240-472E2, WORKING DRAFT SEQUE... 44 8.6 1
(AC175007) Atelerix albiventris clone LB4-206A16, WORKING DR... 44 8.6 1
(AC172850) Bos taurus clone CH240-265B11, WORKING DRAFT SEQU... 44 8.6 1
(AC164242) Bos taurus clone CH240-139A8, *** SEQUENCING IN P... 44 8.6 1
(BC030604) Homo sapiens trafficking protein particle complex... 44 8.6 1
(BH166003) ENTPY34TFB Entamoeba histolytica Sheared DNA Enta... 44 8.6 1
(BH155303) ENTTN88TF Entamoeba histolytica Sheared DNA Entam... 44 8.6 1
(FH196847) CHO_OF3056xo19r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 8.6 1
(EK308135) 1095462387654 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.6 1
(EI814884) POTHA30TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 8.6 1
(CR347122) mte1-80H20RM1 BAC end, cultivar Jemalong A17 of M... 44 8.6 1
(ES421861) pm_OSU_shoot_MH_2003-04_003D12 Douglas-fir maximu... 44 8.6 1
(DY529665) BAAC-PNP1310M02.g2 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY528343) BAAC-PNP1306C15.g2 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY528153) BAAC-PNP1303J15.g2 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY527852) BAAC-PNP1300M02.g2 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY527031) BAAC-PNP1298I07.g2 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY526667) BAAC-PNP1311I11.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY526065) BAAC-PNP1305O15.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY525978) BAAC-PNP1305K23.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY525953) BAAC-PNP1305J21.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY525074) BAAC-PNP1302E12.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY524718) BAAC-PNP1301F08.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DY524627) BAAC-PNP1301B10.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT937507) BAAC-PNP1274M22.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT937103) BAAC-PNP1286C14.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT936655) BAAC-PNP1284O01.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT936149) BAAC-PNP1283E07.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT935956) BAAC-PNP1282K06.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT935734) BAAC-PNP1282A04.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT935601) BAAC-PNP1281H03.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT934585) BAAC-PNP1278H21.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT934119) BAAC-PNP1276H19.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DT933796) BAAC-PNP1275J03.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DR781503) BAAC-PNP1265N05.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DR779427) BAAC-PNP1259O10.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DR779398) BAAC-PNP1259M22.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DR779337) BAAC-PNP1259J21.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DR777230) BAAC-PNP1253K21.g1 C.remanei EST SB146 Caenorhabd... 44 8.6 1
(DR408678) mhn43e03.b1 C.remanei EST SB146 Caenorhabditis re... 44 8.6 1
(DR408298) mhn33a05.b1 C.remanei EST SB146 Caenorhabditis re... 44 8.6 1
(DR407347) mhm87g11.b1 C.remanei EST SB146 Caenorhabditis re... 44 8.6 1
(DR406938) mhn19h05.b1 C.remanei EST SB146 Caenorhabditis re... 44 8.6 1
(DR406838) mhm89c10.b1 C.remanei EST SB146 Caenorhabditis re... 44 8.6 1
(DR406553) mhn34d08.b1 C.remanei EST SB146 Caenorhabditis re... 44 8.6 1
(DR005824) TC106985 Human prostate, large insert, pCMV expre... 44 8.6 1
(GO423018) EST_lbra_evt_1112187 lbraevt mixed_tissue Lernaeo... 44 8.6 1
(FM116581) Rattus norvegicus EST, 3'-end sequence, clone etn... 44 8.6 1
(EJ446256) 1093015334692 Global-Ocean-Sampling_GS-28-01-01-1... 34 9.8 3
(AL603844) Human DNA sequence from clone RP11-541I21 on chro... 36 9.8 4
>(AU263573) Dictyostelium discoideum vegetative cDNA clone:VSD159,
3' end single read.
Length = 708
Score = 856 bits (432), Expect(4) = 0.0
Identities = 432/432 (100%)
Strand = Plus / Plus
Query: 41 tgacagtttatttaacaagacatggtttaagagaggattggattaataaattatggagat 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tgacagtttatttaacaagacatggtttaagagaggattggattaataaattatggagat 98
Query: 101 ctacagcattaagaccatcagatccacctttatcggcacgtggatttcatatagctaaag 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 ctacagcattaagaccatcagatccacctttatcggcacgtggatttcatatagctaaag 158
Query: 161 agttgggtattttcagtaaaactttaggattaaaacatattatatcatcaccaatggaga 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 agttgggtattttcagtaaaactttaggattaaaacatattatatcatcaccaatggaga 218
Query: 221 gatgtattcaaacaagtacagcaatagctgatgaattagatttgccaattaaaattgatt 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gatgtattcaaacaagtacagcaatagctgatgaattagatttgccaattaaaattgatt 278
Query: 281 atggtgttattgaatgggttggttctgatccaagacctgatgatattttaaatccacttt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 atggtgttattgaatgggttggttctgatccaagacctgatgatattttaaatccacttt 338
Query: 341 caaatgaggaattaaaattaaaatatccaagaattgatttagattataaatcaacaacaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caaatgaggaattaaaattaaaatatccaagaattgatttagattataaatcaacaacaa 398
Query: 401 ataatataccaacaaaagaatcaattgaagaattacatgaaagaacaaagatatcagttg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ataatataccaacaaaagaatcaattgaagaattacatgaaagaacaaagatatcagttg 458
Query: 461 atcaaatcattg 472
||||||||||||
Sbjct: 459 atcaaatcattg 470
Score = 371 bits (187), Expect(4) = 0.0
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 473 gaaaagtttaaagatgatggaccaatcattatcgtttctcatgccgctacaatgattgct 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gaaaagtttaaagatgatggaccaatcattatcgtttctcatgccgctacaatgattgct 529
Query: 533 ttaggtagaggtattttaaatgataataatgcaccattaagatctggtgtttgtagttta 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ttaggtagaggtattttaaatgataataatgcaccattaagatctggtgtttgtagttta 589
Query: 593 tccaaatttaattttaatactacagaaaataaatgggaacttgaatatactggtaaatct 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tccaaatttaattttaatactacagaaaataaatgggaacttgaatatactggtaaatct 649
Query: 653 gatttca 659
|||||||
Sbjct: 650 gatttca 656
Score = 44.1 bits (22), Expect(4) = 0.0
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 661 ggaagatggagaacaatctcat 682
||||||||||||||||||||||
Sbjct: 657 ggaagatggagaacaatctcat 678
Score = 38.2 bits (19), Expect(4) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 683 tggacttttaaacgtccag 701
|||||||||||||||||||
Sbjct: 678 tggacttttaaacgtccag 696
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 980,111,787
Number of extensions: 60748074
Number of successful extensions: 5213287
Number of sequences better than 10.0: 136
Length of query: 819
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 795
Effective length of database: 102,084,959,077
Effective search space: 81157542466215
Effective search space used: 81157542466215
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home