Dictyostelium discoideum cDNA Contig-U06394-1

Assembled

Chromosomal Location of Contig-U06394-1

Sequence Contig-U06394-1

AAAAAAAAAA ANCCCAAAAT GGTAAAAAAG AATTCATTTT TTGATAAAGA
TACAGCNCAA ACAATTAAAA ATGTTAAAGA TTCNNTGATN CCACCAAATT
TAGAGAATGA AAATTTAATG CATAATACCC ATATTCCAAA ATATTTAAAG
GATAAAATCG ATAAGAATCA AAAGATATAT CAAGAGAATC AAAAAATAAA
TGCAGAAAAT GCAAAACTCG GTGGACCTGG TGGTCCAAAA CATTTATGGT
CAAATGATCC AAACTCNTTT AAACCTTATG AAAGTTTTTC AGATTATTTT
AATACAAGTA ATAAGAATTT CGAAAGTAAA GGAGGTAATA ATCCAAATAA
ACCTGTAAAT TTAAATGTAC CTGAAATGTA TAAAGGTTTT GTTAGAATTT
AATTCATATG CATGGGGTAT TGCTGCGACA ATTGGAATCA TAGGTTATTT
AGGTTTTAAA TTTGTAAACA AAGCTCATGA TTTAACTTCT TCAACTCAAA
AACAAAAACA AACAGAATAG TTTTTTTTCA TTTTTTTAAA AAAAAAGAAA
AAAAAATAAT AACAATATAA TAGTAGTAAT AATAATAAAT AATATTCTCA
AAAATAATAA AATAATAAAA TAATAAAAAT TTCATATCAC AACACCCCAA
AATACAAAAA AAAAAAAAAA AAAAAAGAAG ACACCCAAAA TCAAATTGTA
CAAAATAAAA AAAAAATAAA AAAAAAAAAA AAGTATTCAC TATGGGGGGT
GTGGGTGTGT GTTCAAGTAA ATATAATAAA AAAACAATTT GTAAATAAC

Translated Amino Acid Sequence Contig-U06394-1

KKKXPKMVKKNSFFDKDTAQTIKNVKDSXXPPNLENENLMHNTHIPKYLKDKIDKNQKIY
QENQKINAENAKLGGPGGPKHLWSNDPNSFKPYESFSDYFNTSNKNFESKGGNNPNKPVN
LNVPEMYKGFVRI*ficmgyccdnwnhrlfrf*ickqss*fnffnsktktnrivffhffk
kkekkiiti*******iifskiik**nnknfisqhpkiqkkkkkkrrhpksnctk*kknk
kkkkvftmggvgvcsskynkktick*

Homology Contig-U06394-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U06394-1 (Contig-U06394-1Q) /CSM_Contig/Conti...  1011  0.0
Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U12609-1 (Contig-U12609-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U11149-1 (Contig-U11149-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U00247-1 (Contig-U00247-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U14527-1 (Contig-U14527-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U14258-1 (Contig-U14258-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U14077-1 (Contig-U14077-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U11465-1 (Contig-U11465-1Q) /CSM_Contig/Conti...    34  0.22

Homology Contig-U06394-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU269444) Dictyostelium discoideum vegetative cDNA clone:VS...   535   0.0    2
(AU262165) Dictyostelium discoideum vegetative cDNA clone:VS...   248   e-149  4
(AC192136) Pan troglodytes BAC clone CH251-590L2 from chromo...    40   0.33   2
(AL772239) Mouse DNA sequence from clone RP23-179O4 on chrom...    48   0.37   5
(AC216917) Populus trichocarpa clone POP066-L06, complete se...    42   0.44   3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.52   11
(AC159285) Mus musculus BAC clone RP23-306M13 from chromosom...    48   0.54   1
(AC154470) Mus musculus BAC clone RP23-193P13 from chromosom...    48   0.54   1
(AC107642) Mus musculus chromosome 8, clone RP23-54J1, compl...    48   0.54   1
(DD391982) Method and nucleic acids for the improved treatme...    48   0.54   1

Homology Contig-U06394-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.57
AF491298_1(AF491298|pid:none) Plasmodium falciparum strain K1 D1...    37   0.57
AF491296_1(AF491296|pid:none) Plasmodium falciparum strain MAD20...    37   0.97
CP000049_532(CP000049|pid:none) Borrelia turicatae 91E135, compl...    35   2.8
AY692274_1(AY692274|pid:none) Borrelia turicatae P-553 gene, com...    35   2.8
AY692277_1(AY692277|pid:none) Borrelia hermsii P-553 gene, compl...    35   3.7
AL035476_37(AL035476|pid:none) Plasmodium falciparum MAL4P3.  &A...    34   4.8
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    34   4.8
AE014187_720(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.8
AL445563_279(AL445563|pid:none) Mycoplasma pulmonis (strain UAB ...    34   4.8