<Clone: Contig-U06085-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

Dictyostelium discoideum cDNA Contig-U06085-1

Dictyostelium discoideum cDNA Project Home

Assembled

Chromosomal Location of Contig-U06085-1

< more Chromosomal info >

Chromosome Number 3
Length 6358359
Start Poin 1,085,362
End Point 1,086,286
Strand PLUS

Sequence Contig-U06085-1

TGGGTACCGG GTCCCCCCCT CGGGTCGACC CCGCGTCCGA AACAATAATA
AAATAACAAT AATAAAATAA AAATAAATAA ATAAAATAAA TAAAAAAATG
ATTAAATCAT TAAGAATTGG ATTATTAAAA TGTGATTCGT TTATACCAGA
TATTAAAAAT AAATTTGGAG ACATTGATAG TCAATTTAAG AATTTATTAA
ATAGTAATAC TAAATCAATG AATATTGATT TATCAGTATT TGAAGTTGCA
AATGATCAAT TCCCAAGTAA AGAAGATTGT TTAGATAAAC AAAAATTTCA
GCGGATTTAT AATTAGTGGT AGTAAAAGTT CAGTGAATGA TGATAAAGAT
TGGATAAAGA AATTAAAAGA ATATATTCAA TTCTTTTCAG AGAATAATGT
TAAAACCATT GGTGTTTGTT TTGGACATCA AGCGATTGCA ACAGCATTAG
GTGGAAAAGT ATCATATAAT CCAAAAGGTT GGACTGTTTC AGATTATAAA
ATTAATTATA TCAATGATTC AAATTTTCAT AAAGAAAATC CATTAGTTTT
TAATGATATA ATTAAACAAT CACCACCACA GCAACAACAA CAACAAGAAC
AACAACCACC TCCATATTTA AATATAATTT GTATAAATAA AGAAATTGTA
ACAGAAATAC CAAAAGATTT TAAAATTTTT GCAAAAAATG AAAGATCTGA
TAATCAAAGC AAATGTATTT TAAAAATCAA TTCTATTCTT TTCAAGGTCA
TCCAGAATAT ACACCAGAAT TAATTAAAGC AACAATCTTA TCAAGAAGAG
GAATTATCCC TGATGAAATT ATTGATGATG GTATTAACAG AGCAAATAAT
TCAAATATTG ATAGATCAGC TTTTGCAAAT GGAATGATTG ATTTCTTTAT
TGAAAAATAA AAATAAAAAA AAATAAAAAA TAAAAAATAC TATTTATAAA
TTATTAAATA T

Translated Amino Acid Sequence Contig-U06085-1

<All Frames> 
gtgspprvdpasetiik*q**nknk*ik*ikk*lnh*eldy*nvirlyqilkinletliv
nlriy*ivilnq*iliyqylklqminsqvkkiv*INKNFSGFIISGSKSSVNDDKDWIKK
LKEYIQFFSENNVKTIGVCFGHQAIATALGGKVSYNPKGWTVSDYKINYINDSNFHKENP
LVFNDIIKQSPPQQQQQQEQQPPPYLNIICINKEIVTEIPKDFKIFAKNERSDNQSKCIL
KINSILFKVIQNIHQN*lkqqsyqeeelslmkllmmvlteqiiqilidqllqme*lisll
knknkkk*kikntiyklln


Homology Contig-U06085-1 vs CSM-Contig

<more CONTIG info> 
Sequences producing significant alignments:                        (bits)  Value


Contig-U06085-1 (Contig-U06085-1Q) /CSM_Contig/Conti...   957  0.0
Contig-U14173-1 (Contig-U14173-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U14905-1 (Contig-U14905-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U11768-1 (Contig-U11768-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U06959-1 (Contig-U06959-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U05312-1 (Contig-U05312-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04925-1 (Contig-U04925-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U02284-1 (Contig-U02284-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U01539-1 (Contig-U01539-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U04735-1 (Contig-U04735-1Q) /CSM_Contig/Conti...    38  0.017


Homology Contig-U06085-1 vs DNA

<more DNA info> 
Sequences producing significant alignments:                  (bits) Value  N


(AU264949) Dictyostelium discoideum vegetative cDNA clone:VS...   553   0.0    2
(AU266852) Dictyostelium discoideum vegetative cDNA clone:VS...   398   0.0    3
(AU262671) Dictyostelium discoideum vegetative cDNA clone:VS...   349   0.0    3
(AU264950) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-158  4
(BJ430783) Dictyostelium discoideum cDNA clone:ddv8a22, 3' e...   313   6e-87  2
(BJ412495) Dictyostelium discoideum cDNA clone:ddv8a22, 5' e...   242   2e-59  1
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    36   3e-04  17
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   4e-04  17
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   4e-04  17
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                38   0.001  16


Homology Contig-U06085-1 vs Protein

<more Protein info> 
Sequences producing significant alignments:                      (bits) Value


CP000931_3836(CP000931|pid:none) Shewanella halifaxensis HAW-EB4...    59   4e-12
CP000961_2087(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    59   2e-11
CP000472_404(CP000472|pid:none) Shewanella piezotolerans WP3, co...    58   2e-10
CR628337_2185(CR628337|pid:none) Legionella pneumophila str. Len...    69   2e-10
AE017354_2206(AE017354|pid:none) Legionella pneumophila subsp. p...    69   2e-10
AC116305_14(AC116305|pid:none) Dictyostelium discoideum chromoso...    67   2e-10
CR628336_2207(CR628336|pid:none) Legionella pneumophila str. Par...    65   3e-09
AM920436_556(AM920436|pid:none) Penicillium chrysogenum Wisconsi...    53   3e-09
CP000489_1380(CP000489|pid:none) Paracoccus denitrificans PD1222...    51   7e-09
CP000821_2523(CP000821|pid:none) Shewanella sediminis HAW-EB3, c...    57   7e-09


<Clone: Contig-U06085-1> <SEQ> <Translated> <CONTIG> <DNA> <Protein> <PSORT> <MOTIF>

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