Dictyostelium discoideum cDNA Contig-U06056-1

Assembled

Chromosomal Location of Contig-U06056-1

Sequence Contig-U06056-1

TCCCAACTCA AACTTTAGGT AAATGTGGTA AAATGTTACC AGTTATGCTC
GTTGGTACCT TTATTAGTGG TAAAAAATAT GGTTTAAAAG ATTATTCAAT
CGCTTTAACA ATTACAACTG GTTGTATGAT TTTCTTTTTA ACTGGTAAAA
TTTCAAATAA TGAAAGTTCA AATACTTCAT ATGGTATCAT TTTAATGGCA
TTATATATGT TTTTCGATAG TTTTACAAGT ACTTTCCAAG AAAAGATGTT
TAAAGGTTAT ACTATGAGTA CTTATGATCA AATGATTTAT GTTAATGGAT
GTTCATCAAT AATTTCAGTA TTTATTTTAA TTTTAAATGG AAGATTATTC
CCAGCAATAG AATTTATTTC AACACATAAT GGTGTATTTT TCGATTCAAC
AATGTTATCA GCATCTGCAG GTTTAGGTCA AATGGTAATT TATTACACAA
TCAAAGAATT TGGAGCATTG GTTTTCTCAA CCATTATGGT TACAAGACAA
ATGGTATCAA TCATTCTTTC AACACTTATT TATCTTCATC CATTATCAAA
TACTCAATGG ATTGGTGCCC TTTTAGTATT TGGTACCTTA TATTATAAAT
CAATTGAAGA TAGTAAAAAG AAACATGGTG GTCATAGTCA TGGTGGTAGT
AACGCAGCTA CAACTACAAC TCCATCTAAT AATAGTAATA ATACCGAAAA
ATAAAGAGGA GTCAAA

Translated Amino Acid Sequence Contig-U06056-1

PTQTLGKCGKMLPVMLVGTFISGKKYGLKDYSIALTITTGCMIFFLTGKISNNESSNTSY
GIILMALYMFFDSFTSTFQEKMFKGYTMSTYDQMIYVNGCSSIISVFILILNGRLFPAIE
FISTHNGVFFDSTMLSASAGLGQMVIYYTIKEFGALVFSTIMVTRQMVSIILSTLIYLHP
LSNTQWIGALLVFGTLYYKSIEDSKKKHGGHSHGGSNAATTTTPSNNSNNTEK*rgvk

Homology Contig-U06056-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U06056-1 (Contig-U06056-1Q) /CSM_Contig/Conti...  1419  0.0
Contig-U11314-1 (Contig-U11314-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U14749-1 (Contig-U14749-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14053-1 (Contig-U14053-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U12086-1 (Contig-U12086-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U10207-1 (Contig-U10207-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14600-1 (Contig-U14600-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti...    36  0.050
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    36  0.050

Homology Contig-U06056-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(BJ430112) Dictyostelium discoideum cDNA clone:ddv6j06, 3' e...  1419   0.0    1
(EI420916) PV_GBa0009C22.r PV_GBa Phaseolus vulgaris genomic...    52   0.001  2
(CO985910) GM89015B2E11.r2 Gm-r1089 Glycine max cDNA clone G...    56   0.002  1
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   0.035  8
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.047  11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.065  15
(CU571154) M.truncatula DNA sequence from clone MTH2-59O16 o...    34   0.099  9
(DV157138) CV03104B1C09.f1 CV03-normalized library Euphorbia...    50   0.12   1
(DV136666) CV03115A1B01.f1 CV03-normalized library Euphorbia...    50   0.12   1
(CU914143) Zebrafish DNA sequence from clone CH211-39D24 in ...    34   0.13   6

Homology Contig-U06056-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


(Q55DM5) RecName: Full=Adenosine 3'-phospho 5'-phosphosulfate tr...   403   e-111
CP000596_220(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...   211   2e-53
CP001576_14(CP001576|pid:none) Micromonas sp. RCC299 chromosome ...   210   4e-53
AC078977_4(AC078977|pid:none) Oryza sativa (japonica cultivar-gr...   201   2e-50
BT011224_1(BT011224|pid:none) Arabidopsis thaliana.  &BT012152_1...   192   1e-47
BT068443_1(BT068443|pid:none) Zea mays full-length cDNA clone ZM...   190   3e-47
BT011744_1(BT011744|pid:none) Arabidopsis thaliana At5g59740 gen...   189   7e-47
AK175459_1(AK175459|pid:none) Arabidopsis thaliana mRNA, complet...   189   7e-47
CR954217_224(CR954217|pid:none) Ostreococcus tauri strain OTTH05...   185   1e-45
AB006705_14(AB006705|pid:none) Arabidopsis thaliana genomic DNA,...   162   9e-39