Dictyostelium discoideum cDNA Contig-U05909-1

Assembled

Chromosomal Location of Contig-U05909-1

Sequence Contig-U05909-1

AAAAAATGTT AAAATCAATT AGAACATTTA ACACTTTTGT TAAAACAAAT
TATTTATATA GAAATTTTTC AAATAAACCA TTAAATTATA ATAATAATAA
TAGTAATAAA ATTATTACAC CATTGTGCTA TGAAAATAAT AATAACAAAT
CTTTATTTAA TACAAGTATT GGTATTAATA AAAATAATAA ATTAAATAAT
AATAATATAT CATTCTTTTC ACATAATTCA ATTTTACCAA TAGTATCAAA
TATTAGACAA TTCTCATCAT CATCAAATTT ACCAAATTCA CCAAAACAAG
AAAAAGATAA TGAAAAAGAN AATNAAAAAG ACAACGACGA TGATGATGAT
GGTATTGATG AAAAAGAGAA ATTAAAAAAA TTAAGTACAG GTGAAAAAAT
TAAATATATG TTTAGCAAAT ATGGTAAATT GGCATTAATA GTTCATTTTG
GTATTTATTT CGCAACAATG GGTAGTTTCT ATGTATTATT CTCATCAGGT
GTTGATATCA ACAATGCACT TGACTTTTTA CATATTCCAC GTAATGCTGT
TAACCCAAGT TTAGGTGCAT TTGCTGTTGC ATTTGCTTGT ACAAAAATTT
CAACAGTAGT TCGTACTCCA CTCACTTTAA TCACTGTACC ATTATTAGCT
CGTTATTTAT CAAGAGCAGG TAAAAAGTTA TAAAAAGTTA TAAAAAGATA
AAAAATAATA AAAAAAATAA TAGATGTCCG AATATTCTAA AAACCAAGTA
AATAAATAAT TTGTTAAATA AATAAAAAAG ATTTTATTAA AAA

Translated Amino Acid Sequence Contig-U05909-1

KMLKSIRTFNTFVKTNYLYRNFSNKPLNYNNNNSNKIITPLCYENNNNKSLFNTSIGINK
NNKLNNNNISFFSHNSILPIVSNIRQFSSSSNLPNSPKQEKDNEKXNXKDNDDDDDGIDE
KEKLKKLSTGEKIKYMFSKYGKLALIVHFGIYFATMGSFYVLFSSGVDINNALDFLHIPR
NAVNPSLGAFAVAFACTKISTVVRTPLTLITVPLLARYLSRAGKKL*kvikr*kiikkii
dvrif*kpsk*iic*inkkdfik

Homology Contig-U05909-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U05909-1 (Contig-U05909-1Q) /CSM_Contig/Conti...   527  e-150
Contig-U13366-1 (Contig-U13366-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U10938-1 (Contig-U10938-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13482-1 (Contig-U13482-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U02283-1 (Contig-U02283-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U01495-1 (Contig-U01495-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U12702-1 (Contig-U12702-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U11124-1 (Contig-U11124-1Q) /CSM_Contig/Conti...    36  0.056
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti...    36  0.056

Homology Contig-U05909-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(AU261426) Dictyostelium discoideum vegetative cDNA clone:VS...   525   e-145  1
(C93347) Dictyostelium discoideum slug cDNA, clone SSM656.        525   e-145  1
(AU074989) Dictyostelium discoideum slug cDNA, clone SSM656.       78   2e-21  2
(EK408714) 1095505109045 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.13   1
(EK407500) 1095505087005 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.13   1
(EY303002) CAWX16470.rev CAWX Helobdella robusta Primary Ear...    38   0.96   2
(CQ586553) Sequence 14311 from Patent WO0171042.                   46   2.1    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    46   2.1    1
(AC104508) Drosophila melanogaster 3L BAC RP98-1O19 (Roswell...    46   2.1    1
(AC091208) Drosophila melanogaster 3L BAC RP98-46N3 (Roswell...    46   2.1    1

Homology Contig-U05909-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC166836_1(BC166836|pid:none) Rattus norvegicus similar to RIKEN...    67   9e-10
BC017725_1(BC017725|pid:none) Homo sapiens chromosome 20 open re...    66   1e-09
(Q96KR6) RecName: Full=Transmembrane protein C20orf108;  &AK0755...    66   1e-09
AK148334_1(AK148334|pid:none) Mus musculus B16 F10Y cells cDNA, ...    64   4e-09
AK008190_1(AK008190|pid:none) Mus musculus adult male small inte...    64   4e-09
(Q9D8B6) RecName: Full=Transmembrane protein C20orf108 homolog; ...    64   4e-09
AE014134_582(AE014134|pid:none) Drosophila melanogaster chromoso...    60   6e-08
BC121631_1(BC121631|pid:none) Xenopus tropicalis hypothetical pr...    59   1e-07
BC076760_1(BC076760|pid:none) Xenopus laevis MGC83126 protein, m...    59   1e-07
AY071311_1(AY071311|pid:none) Drosophila melanogaster RE33778 fu...    59   2e-07