Homology Contig-U05709-1 vs DNA
Query= Contig-U05709-1 (Contig-U05709-1Q) /CSM_Contig/Contig-U05709-1Q.Seq.d
(593 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(C94299) Dictyostelium discoideum slug cDNA, clone SSK759. 329 1e-95 2
(AU074453) Dictyostelium discoideum slug cDNA, clone SSK759. 260 6e-65 1
(AP009020) Bombyx mori genomic DNA, chromosome 19, BAC clone... 44 0.097 2
(DE339822) Bombyx mori genomic DNA, BAC clone:BET_032_D04. 42 0.12 2
(DE299314) Bombyx mori genomic DNA, BAC clone:BES_051_G07. 42 0.16 2
(DE371537) Bombyx mori genomic DNA, BAC clone:BET_633_F21. 42 0.19 2
(AC161844) Bos taurus clone CH240-101B7, WORKING DRAFT SEQUE... 34 0.23 2
(AC179099) Strongylocentrotus purpuratus clone R3-4011C1, WO... 34 0.23 2
(AC175642) Loxodonta africana clone VMRC15-221K23, WORKING D... 34 0.23 2
(AC201595) Strongylocentrotus purpuratus clone R3-42O1, WORK... 34 0.24 2
(AC221188) Bos taurus clone CH240-397H10, WORKING DRAFT SEQU... 34 0.25 2
(AC186384) Pan troglodytes BAC clone CH251-680J1 from chromo... 48 0.39 1
(EL597963) He_pwd_0196F05_M13R Heliconius erato pooled wing ... 48 0.39 1
(DE295928) Bombyx mori genomic DNA, BAC clone:BES_041_J14. 42 0.72 2
(EI370642) POTCO07TF Solanum tuberosum RHPOTKEY BAC ends Sol... 36 1.1 2
(AC130630) Rattus norvegicus clone CH230-84K18, WORKING DRAF... 46 1.4 4
(AC126658) Rattus norvegicus clone CH230-75A3, WORKING DRAFT... 46 1.6 1
(CU694618) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.6 1
(AC230480) Bos taurus clone CH240-507N1, WORKING DRAFT SEQUE... 46 1.6 1
(AC222617) Bos taurus clone CH240-444F20, WORKING DRAFT SEQU... 46 1.6 1
(DE415586) Bombyx mori genomic DNA, BAC clone:15I4G. 46 1.6 1
(CT106736) Sus scrofa genomic clone PigE-99O11, genomic surv... 46 1.6 1
(AG361205) Mus musculus molossinus DNA, clone:MSMg01-161O21.... 46 1.6 1
(EW767118) ST020031A20C05 Normalized and subtracted western ... 46 1.6 1
(CV644614) EST923367 Field isolate cDNA library Plasmodium v... 42 1.7 2
(AB159445) Bombyx mori DNA, chromosome 2, clone:544H24. 42 2.0 3
(DE494446) Bombyx mori genomic DNA, Fosmid clone:GBMFno103_e... 42 2.0 2
(DE176734) Bombyx mori genomic DNA, Fosmid clone:RO0328-B19_F. 42 2.1 2
(AC007171) Arabidopsis thaliana chromosome 2 clone T8O18 map... 38 2.4 4
(AP008995) Bombyx mori genomic DNA, chromosome 7, BAC clone:... 42 2.5 4
(CV634597) EST913350 Field isolate cDNA library Plasmodium v... 42 2.7 2
(CV645567) EST924320 Field isolate cDNA library Plasmodium v... 42 2.7 2
(DE363990) Bombyx mori genomic DNA, BAC clone:BET_609_F17. 42 2.7 2
(AC040967) Homo sapiens chromosome 2 clone RP11-437E19 map 2... 42 2.8 3
(AC108026) Homo sapiens BAC clone RP11-41E15 from 4, complet... 40 3.0 3
(CU179713) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.0 2
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 3.1 3
(FI818600) SIR-64K22JR Sisymbrium irio BAC library SIR Sisym... 34 4.0 2
(AC153267) Bos taurus clone CH240-23F9, WORKING DRAFT SEQUEN... 42 5.1 3
(AC145752) Pan troglodytes BAC clone RP43-32B3 from chromoso... 44 6.2 1
(DL052371) COMPOSITIONS AND METHODS FOR THE THERAPY AND DIAG... 44 6.2 1
(CQ459867) Sequence 2645 from Patent WO0192581. 44 6.2 1
(GC701259) Sequence 16504 from patent US 6812339. 44 6.2 1
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 44 6.2 1
(AC099051) Homo sapiens chromosome 3 clone RP11-416A9, compl... 44 6.2 1
(AC018926) Homo sapiens chromosome 15 clone RP11-139H15 map ... 44 6.2 1
(AC004066) Homo sapiens chromosome 4 clone B353C18 map 4q25,... 44 6.2 1
(AC108936) Homo sapiens chromosome 4 clone RP11-642P17, WORK... 44 6.2 1
(AC093696) Homo sapiens chromosome 4 clone RP11-804G19, *** ... 44 6.2 1
(CU302368) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.2 1
(CT573371) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.2 1
(AP001946) Homo sapiens genomic DNA, chromosome 4q22-q24, cl... 44 6.2 1
(AC181169) Strongylocentrotus purpuratus clone R3-3039I07, W... 44 6.2 1
(AC179573) Strongylocentrotus purpuratus clone R3-1029N9, WO... 44 6.2 1
(AC177217) Strongylocentrotus purpuratus clone R3-40F8, WORK... 44 6.2 1
(AC176997) Strongylocentrotus purpuratus clone R3-37A14, WOR... 44 6.2 1
(AC013569) Homo sapiens clone RP11-1C17, WORKING DRAFT SEQUE... 44 6.2 1
(BH426072) BOHMP72TF BOHM Brassica oleracea genomic clone BO... 44 6.2 1
(FH218318) CHO_OF3345xd10r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.2 1
(FH087800) CHO_OF3858xk08r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.2 1
(EJ284892) 1095368014676 Global-Ocean-Sampling_GS-27-01-01-1... 44 6.2 1
(DE634961) Bombyx mori genomic DNA, Fosmid clone:GBMFno380_g... 44 6.2 1
(DE632252) Bombyx mori genomic DNA, Fosmid clone:GBMFno376_j... 44 6.2 1
(DE622134) Bombyx mori genomic DNA, Fosmid clone:GBMFno362_e... 44 6.2 1
(DE593716) Bombyx mori genomic DNA, Fosmid clone:GBMFno248_n... 44 6.2 1
(DE544940) Bombyx mori genomic DNA, Fosmid clone:GBMFno176_n... 44 6.2 1
(DE540762) Bombyx mori genomic DNA, Fosmid clone:GBMFno169_j... 44 6.2 1
(DE507242) Bombyx mori genomic DNA, Fosmid clone:GBMFno121_f... 44 6.2 1
(DE504775) Bombyx mori genomic DNA, Fosmid clone:GBMFno117_o... 44 6.2 1
(DE485499) Bombyx mori genomic DNA, Fosmid clone:GBMFno91_b1... 44 6.2 1
(DE399708) Bombyx mori genomic DNA, BAC clone:20L6G. 44 6.2 1
(DE366018) Bombyx mori genomic DNA, BAC clone:BET_615_N02. 44 6.2 1
(DE353365) Bombyx mori genomic DNA, BAC clone:BET_073_B06. 44 6.2 1
(DE341966) Bombyx mori genomic DNA, BAC clone:BET_038_K08. 44 6.2 1
(DE327113) Bombyx mori genomic DNA, BAC clone:BES_647_K06. 44 6.2 1
(DE325349) Bombyx mori genomic DNA, BAC clone:BES_640_H09. 44 6.2 1
(DE324549) Bombyx mori genomic DNA, BAC clone:BES_637_H23. 44 6.2 1
(DE315040) Bombyx mori genomic DNA, BAC clone:BES_605_E02. 44 6.2 1
(DE313470) Bombyx mori genomic DNA, BAC clone:BES_096_G18. 44 6.2 1
(DE155752) Bombyx mori genomic DNA, Fosmid clone:RO0298-J07_F. 44 6.2 1
(CZ004465) OA_BBa0054O17.r OA_BBa Oryza alta genomic clone O... 44 6.2 1
(CL586703) OB__Ba0084B06.r OB__Ba Oryza brachyantha genomic ... 44 6.2 1
(CL572306) OB__Ba0014J22.r OB__Ba Oryza brachyantha genomic ... 44 6.2 1
(BH988112) oej25h05.b1 B.oleracea002 Brassica oleracea genom... 44 6.2 1
(DR758730) USDA-FP_119500-030 adult black-winged sharpshoote... 44 6.2 1
(DN474159) USDA-FP_148149 Adult sharpshooter leafhopper Onco... 44 6.2 1
(AA284654) zt23h08.r1 Soares ovary tumor NbHOT Homo sapiens ... 44 6.2 1
(CU313306) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.2 3
(AM450148) Vitis vinifera contig VV78X045398.4, whole genome... 36 8.4 2
(ER865541) PPTB430TF Solanum tuberosum RHPOTKEY BAC ends Sol... 32 9.4 3
(AC234784) Solanum tuberosum chromosome 6 clone RHPOTKEY179H... 36 9.5 5
(DQ141103) Bombyx mori Dscam gene, partial sequence. 42 9.5 3
>(C94299) Dictyostelium discoideum slug cDNA, clone SSK759.
Length = 425
Score = 329 bits (166), Expect(2) = 1e-95
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 170 ccatttaaatgaatggatatacaatgtatctataataaaagatacattaaatcaaattaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccatttaaatgaatggatatacaatgtatctataataaaagatacattaaatcaaattaa 60
Query: 230 tactaaaaatacaagactacatttaattttaataaatactgatttatcaagtattgaatc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tactaaaaatacaagactacatttaattttaataaatactgatttatcaagtattgaatc 120
Query: 290 aattagtaacatattatcaaaatattatagtatacttagtaattat 335
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattagtaacatattatcaaaatattatagtatacttagtaattat 166
Score = 58.0 bits (29), Expect(2) = 1e-95
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 401 ctacaatgatggtgatgatcaaaattttc 429
|||||||||||||||||||||||||||||
Sbjct: 232 ctacaatgatggtgatgatcaaaattttc 260
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 400,066,095
Number of extensions: 28437368
Number of successful extensions: 4165627
Number of sequences better than 10.0: 94
Length of query: 593
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 570
Effective length of database: 102,190,702,835
Effective search space: 58248700615950
Effective search space used: 58248700615950
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
Dictyostelium discoideum cDNA Project Home