Dictyostelium discoideum cDNA Contig-U05489-1

Assembled

Chromosomal Location of Contig-U05489-1

Sequence Contig-U05489-1

CACATAAATA AATAAATAGA TAAATATATA TTTAAATAAT AAATAATTAA
TAAAATGTCA GGTACAAAAT TTAGAACTGG TGGTACAAAA GAGGATGATT
TATTAGAATT TGTTAAAGTT GGTAAATTAT TAGAAGTTAA AGATTTAATC
GAGAATCAAG GTGTTAAAGC AGATTGTAAG GATGAAGATG AAAGAACACC
ATTACATTGG GCAGCTGCAA AAGGTCAAAT ATCAGTAGCT CAATATTTAA
TGGATAATTG TAAATGTTCA CCAAATACAA ATGATGATGG TGGTTGGACA
TTACCAGTGC TACCTCTGCT GGTCATACTC ATATGGTTAA ATTATTATTA
GAATTTGGTG CTGATCCAAA CACTGTAAAT GATTCAAAAA GAACTCCATT
ACATTATGCA TCATCAAAAG GTAGATCAGA TATTGTTGAT TTATTATTAA
CACATGGAGC AAAGAATAGA AAAGATGATA CAGGATCAGC ACCNANTCAT
AGAGCTTCAT CAAATGGTTC AGTTGCAACA GTTGAAAGAT TATTAAAAGG
TGAAGCAANT ATAAANTCNA CAAATAATGA AGGTGATACA CCATTACATA
TTGCTGCTGA ATACAATCAT GAGGATGTTG TTGAATGTTT ATTGAAACAT
GGTGCTNNTA CAACAATTGC AATTGAAAAT AAAGATAGTA AAACTCCAAT
TGATATGTCA TCTTCTCAAA CTATTAAATA TTTAATTAAA GAATTTAAAA
AATAATTTTA TTGATAAATA ATAATAAATA ATAATCAAAA AAATATATAA
TAATAATAAT AGTAATAATA ATAATATATT TTATAACAAT GTACATAATA
AAATAATAGG

Translated Amino Acid Sequence Contig-U05489-1

hk*inr*iyi*iinn**nvryki*nwwykrg*firic*sw*iirs*rfnresrc*srl*g
*r*kntitlgsckrsnisssifng*l*mftkyk**WWLDITSATSAGHTHMVKLLLEFGA
DPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAKNRKDDTGSAPXHRASSNGSVATVERL
LKGEAXIXSTNNEGDTPLHIAAEYNHEDVVECLLKHGAXTTIAIENKDSKTPIDMSSSQT
IKYLIKEFKK*fy**iiinnnqkni*********yil*qct**nnr

Homology Contig-U05489-1 vs CSM-Contig

Sequences producing significant alignments:                        (bits)  Value


Contig-U05489-1 (Contig-U05489-1Q) /CSM_Contig/Conti...  1306  0.0
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13864-1 (Contig-U13864-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13909-1 (Contig-U13909-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U02425-1 (Contig-U02425-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12361-1 (Contig-U12361-1Q) /CSM_Contig/Conti...    36  0.061
Contig-U11837-1 (Contig-U11837-1Q) /CSM_Contig/Conti...    36  0.061
Contig-U01650-1 (Contig-U01650-1Q) /CSM_Contig/Conti...    36  0.061
Contig-U14659-1 (Contig-U14659-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U14355-1 (Contig-U14355-1Q) /CSM_Contig/Conti...    34  0.24

Homology Contig-U05489-1 vs DNA

Sequences producing significant alignments:                  (bits) Value  N


(C90588) Dictyostelium discoideum slug cDNA, clone SSI814.        664   0.0    2
(AU073944) Dictyostelium discoideum slug cDNA, clone SSI814.      365   2e-96  1
(AR545586) Sequence 717 from patent US 6747137.                    52   4e-07  2
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ...    52   0.037  1
(FC738639) CBBH646.fwd CBBH Lottia gigantea 26h,37h,61h Larv...    44   0.13   2
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    50   0.15   1
(AC171461) Xenopus (Silurana) tropicalis clone CH216-8H16, W...    48   0.58   1
(AC171459) Xenopus (Silurana) tropicalis clone CH216-7L20, W...    48   0.58   1
(EJ348893) 1092963568340 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.58   1
(L42537) Clostridium botulinum ha70, ha17, ha34, orfX, ntnhA...    44   0.92   3

Homology Contig-U05489-1 vs Protein

Sequences producing significant alignments:                      (bits) Value


BC087343_1(BC087343|pid:none) Xenopus laevis hypothetical LOC495...   107   2e-29
BC141731_1(BC141731|pid:none) Xenopus laevis hypothetical protei...   107   2e-29
BC135477_1(BC135477|pid:none) Xenopus tropicalis proteasome (pro...   107   3e-29
BC094958_1(BC094958|pid:none) Danio rerio proteasome (prosome, m...   103   4e-28
BT074723_1(BT074723|pid:none) Osmerus mordax clone omor-rgc-513-...   100   1e-26
BT047998_1(BT047998|pid:none) Salmo salar clone ssal-rgb2-509-13...   100   7e-26
AY888506_1(AY888506|pid:none) Synthetic construct Homo sapiens c...    95   7e-25
DQ000544_1(DQ000544|pid:none) Synthetic construct clone PSF:1084...    94   9e-25
(O75832) RecName: Full=26S proteasome non-ATPase regulatory subu...    94   9e-25
AB170098_1(AB170098|pid:none) Macaca fascicularis brain cDNA clo...    94   9e-25